17 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Predicted Interactions

gene neighborhood

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Your Input:
	TCM_027212	Pre-mRNA-processing-splicing factor isoform 1. (2354 aa)
	TCM_037826	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative. (315 aa)
	TCM_041395	Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
	TCM_042977	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1214 aa)
	TCM_043735	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
	TCM_027144	Squamous cell carcinoma antigen recognized by T-cells 3. (842 aa)
	TCM_000407	U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
	TCM_000813	CCCH-type zinc fingerfamily protein with RNA-binding domain. (495 aa)
	TCM_003324	U2 small nuclear ribonucleoprotein A. (286 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	TCM_010599	Sphere organelles protein-related, putative isoform 1. (640 aa)
	TCM_007489	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. (572 aa)
	TCM_020276	Uncharacterized protein isoform 1. (131 aa)
	TCM_021554	RNA-binding family protein. (338 aa)
	TCM_025029	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1391 aa)
	TCM_026027	RNA-binding family protein isoform 4. (487 aa)
	TCM_026188	RNA-binding family protein. (246 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	TCM_000407	A0A061DSH4	A0A061DH94	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein 70 kDa.	0.676
LSM4	TCM_000813	A0A061DSH4	A0A061DHR1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	CCCH-type zinc fingerfamily protein with RNA-binding domain.	0.519
LSM4	TCM_003324	A0A061DSH4	A0A061DMS8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein A.	0.950
LSM4	TCM_007489	A0A061DSH4	A0A061E961	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related.	0.957
LSM4	TCM_020276	A0A061DSH4	A0A061EKQ7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein isoform 1.	0.676
LSM4	TCM_021554	A0A061DSH4	A0A061EQ81	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding family protein.	0.676
LSM4	TCM_025029	A0A061DSH4	A0A061EY72	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1.	0.851
LSM4	TCM_026027	A0A061DSH4	A0A061F1F8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding family protein isoform 4.	0.813
LSM4	TCM_026188	A0A061DSH4	A0A061F8S2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding family protein.	0.566
LSM4	TCM_027144	A0A061DSH4	A0A061G885	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Squamous cell carcinoma antigen recognized by T-cells 3.	0.983
LSM4	TCM_027212	A0A061DSH4	A0A061GFM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor isoform 1.	0.968
LSM4	TCM_041395	A0A061DSH4	A0A061GU81	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribosomal protein S5/Elongation factor G/III/V family protein.	0.977
LSM4	TCM_042977	A0A061DSH4	A0A061FM28	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1.	0.851
LSM4	TCM_043735	A0A061DSH4	A0A061FW71	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.838
TCM_000407	LSM4	A0A061DH94	A0A061DSH4	U1 small nuclear ribonucleoprotein 70 kDa.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.676
TCM_000407	TCM_003324	A0A061DH94	A0A061DMS8	U1 small nuclear ribonucleoprotein 70 kDa.	U2 small nuclear ribonucleoprotein A.	0.901
TCM_000407	TCM_025029	A0A061DH94	A0A061EY72	U1 small nuclear ribonucleoprotein 70 kDa.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1.	0.736
TCM_000407	TCM_026027	A0A061DH94	A0A061F1F8	U1 small nuclear ribonucleoprotein 70 kDa.	RNA-binding family protein isoform 4.	0.837
TCM_000407	TCM_026188	A0A061DH94	A0A061F8S2	U1 small nuclear ribonucleoprotein 70 kDa.	RNA-binding family protein.	0.413
TCM_000407	TCM_027212	A0A061DH94	A0A061GFM4	U1 small nuclear ribonucleoprotein 70 kDa.	Pre-mRNA-processing-splicing factor isoform 1.	0.793