STRINGSTRING
TCM_003324 TCM_003324 TCM_010599 TCM_010599 TCM_025029 TCM_025029 TCM_042977 TCM_042977 TCM_027212 TCM_027212
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_003324U2 small nuclear ribonucleoprotein A. (286 aa)
TCM_010599Sphere organelles protein-related, putative isoform 1. (640 aa)
TCM_025029Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1391 aa)
TCM_042977Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1214 aa)
TCM_027212Pre-mRNA-processing-splicing factor isoform 1. (2354 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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