STRINGSTRING
TCM_000253 TCM_000253 TCM_046676 TCM_046676 TCM_001023 TCM_001023 TCM_001077 TCM_001077 TCM_001329 TCM_001329 TCM_001536 TCM_001536 TCM_001652 TCM_001652 TCM_001667 TCM_001667 TCM_002192 TCM_002192 TCM_001025 TCM_001025 TCM_005222 TCM_005222 TCM_002131 TCM_002131 TCM_002491 TCM_002491 TCM_046691 TCM_046691 TCM_006828 TCM_006828 TCM_004925 TCM_004925 TCM_007017 TCM_007017 TCM_005016 TCM_005016 TCM_006691 TCM_006691 TCM_006789 TCM_006789 TCM_007077 TCM_007077 TCM_007664 TCM_007664 TCM_008068 TCM_008068 TCM_008184 TCM_008184 TCM_007697 TCM_007697 TCM_006414 TCM_006414 TCM_010129 TCM_010129 TCM_011194 TCM_011194 TCM_011260 TCM_011260 TCM_011662 TCM_011662 TCM_011293 TCM_011293 TCM_011631 TCM_011631 TCM_016934 TCM_016934 TCM_017279 TCM_017279 TCM_011139 TCM_011139 TCM_011292 TCM_011292 TCM_019665 TCM_019665 TCM_020625 TCM_020625 TCM_020661 TCM_020661 TCM_020673 TCM_020673 TCM_021138 TCM_021138 TCM_021691 TCM_021691 TCM_022181 TCM_022181 TCM_022100 TCM_022100 TCM_020717 TCM_020717 TCM_021034 TCM_021034 TCM_025106 TCM_025106 TCM_025856 TCM_025856 TCM_025865 TCM_025865 TCM_026445 TCM_026445 TCM_026431 TCM_026431 TCM_026442 TCM_026442 TCM_026742 TCM_026742 TCM_030975 TCM_030975 TCM_030825 TCM_030825 TCM_030826 TCM_030826 TCM_031420 TCM_031420 TCM_032899 TCM_032899 TCM_030526 TCM_030526 TCM_034520 TCM_034520 TCM_034708 TCM_034708 TCM_031646 TCM_031646 TCM_036535 TCM_036535 TCM_042698 TCM_042698 TCM_042431 TCM_042431 TCM_042767 TCM_042767 TCM_042747 TCM_042747 TCM_043328 TCM_043328 TCM_044507 TCM_044507 TCM_045152 TCM_045152 TCM_036301 TCM_036301 TCM_044779 TCM_044779 TCM_036589 TCM_036589 TCM_042701 TCM_042701 TCM_012022 TCM_012022 TCM_012109 TCM_012109 TCM_013468 TCM_013468 TCM_012853 TCM_012853 TCM_012351 TCM_012351 TCM_013315 TCM_013315 TCM_014698 TCM_014698 TCM_014280 TCM_014280 TCM_014786 TCM_014786 TCM_012003 TCM_012003 TCM_012140 TCM_012140 TCM_015190 TCM_015190 TCM_015419 TCM_015419 TCM_015436 TCM_015436 TCM_015388 TCM_015388 TCM_014476 TCM_014476 TCM_016168 TCM_016168 TCM_015090 TCM_015090 TCM_027389 TCM_027389 TCM_015191 TCM_015191 TCM_029341 TCM_029341 TCM_029273 TCM_029273 TCM_029333 TCM_029333 TCM_029345 TCM_029345 TCM_029888 TCM_029888 TCM_026937 TCM_026937 TCM_027414 TCM_027414 TCM_030466 TCM_030466 TCM_037008 TCM_037008 TCM_036908 TCM_036908 TCM_028873 TCM_028873 TCM_037410 TCM_037410 TCM_029338 TCM_029338 TCM_037973 TCM_037973 TCM_038046 TCM_038046 TCM_039820 TCM_039820 TCM_037118 TCM_037118 TCM_038703 TCM_038703 TCM_040241 TCM_040241 TCM_037622 TCM_037622 ABH1 ABH1 TCM_041594 TCM_041594 TCM_042011 TCM_042011 TCM_041832 TCM_041832 TCM_042089 TCM_042089 TCM_042027 TCM_042027 TCM_042059 TCM_042059 TCM_042251 TCM_042251 TCM_041547 TCM_041547
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000253Nuclear receptor binding set domain containing protein 1, nsd, putative isoform 1. (1443 aa)
TCM_046676Compromised recognition of TCV 1 protein. (629 aa)
TCM_001023Argonaute protein group, putative; Belongs to the argonaute family. (978 aa)
TCM_001077Mediator of RNA polymerase II transcription subunit 18. (217 aa)
TCM_001329Endonuclease or glycosyl hydrolase, putative isoform 1. (1073 aa)
TCM_001536PHD finger transcription factor-like protein isoform 1. (952 aa)
TCM_001652Uncharacterized protein isoform 1. (443 aa)
TCM_001667XS domain-containing protein / XS zinc finger domain-containing protein-related isoform 1. (645 aa)
TCM_002192Eukaryotic translation initiation factor 2c, putative isoform 2; Belongs to the argonaute family. (904 aa)
TCM_001025Argonaute protein group, putative; Belongs to the argonaute family. (970 aa)
TCM_005222Galactose oxidase/kelch repeat superfamily protein isoform 1. (403 aa)
TCM_002131Ribonuclease 3-like protein 3, putative. (301 aa)
TCM_002491Sm domain-containing protein. (359 aa)
TCM_046691Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
TCM_006828SNF2 domain-containing protein / helicase domain-containing protein, putative isoform 1. (899 aa)
TCM_004925Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative isoform 1. (664 aa)
TCM_007017C2H2 and C2HC zinc fingers superfamily protein. (250 aa)
TCM_005016Dicer-like 1 isoform 1; Belongs to the helicase family. Dicer subfamily. (2007 aa)
TCM_006691Xap5 circadian timekeeper isoform 1. (337 aa)
TCM_006789Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1. (1825 aa)
TCM_007077Endonuclease or glycosyl hydrolase. (528 aa)
TCM_007664Helicase-like transcription factor CHR28. (1117 aa)
TCM_008068Pre-mRNA splicing factor-related. (1033 aa)
TCM_008184CAP-binding protein 20 isoform 1. (309 aa)
TCM_007697P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative. (707 aa)
TCM_006414XS domain-containing / XS zinc finger domain-containing protein-related-like protein isoform 1. (659 aa)
TCM_010129DEAD/DEAH box helicase, putative isoform 1. (1167 aa)
TCM_011194Uncharacterized protein. (362 aa)
TCM_011260THO complex subunit 2 isoform 1. (1853 aa)
TCM_011662Uncharacterized protein. (163 aa)
TCM_011293RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1125 aa)
TCM_011631Argonaute family protein; Belongs to the argonaute family. (1014 aa)
TCM_016934Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein. (837 aa)
TCM_017279DsRNA-binding protein 3 isoform 1. (497 aa)
TCM_011139SNF2 domain-containing protein / helicase domain-containing protein isoform 3. (737 aa)
TCM_011292RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1109 aa)
TCM_019665RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (173 aa)
TCM_020625XS domain-containing protein. (496 aa)
TCM_020661P-loop containing nucleoside triphosphate hydrolases superfamily protein. (876 aa)
TCM_020673Rna-directed dna methylation 1 isoform 1. (176 aa)
TCM_021138DsRNA-binding protein 5, putative isoform 1. (566 aa)
TCM_021691HEAT repeat-containing protein isoform 1. (1338 aa)
TCM_022181Chromatin remodeling complex subunit-like protein isoform 1. (1961 aa)
TCM_022100Pre-mRNA splicing factor-related. (116 aa)
TCM_020717Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1; Belongs to the argonaute family. (994 aa)
TCM_021034SU(VAR)3-9, putative isoform 1. (688 aa)
TCM_025106Dicer-like protein isoform 1; Belongs to the helicase family. Dicer subfamily. (1418 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_025865Double-stranded-RNA-binding protein 4, putative. (448 aa)
TCM_026445ARM repeat superfamily protein isoform 1. (1211 aa)
TCM_026431P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (882 aa)
TCM_026442DsRNA-binding protein 3. (546 aa)
TCM_026742Polynucleotidyl transferase isoform 1. (578 aa)
TCM_030975SMAD/FHA domain-containing protein isoform 9. (463 aa)
TCM_030825RNAse THREE-like protein 2 isoform 1. (371 aa)
TCM_030826Ribonuclease 3-like protein 2. (379 aa)
TCM_031420Silencing defective 5, putative isoform 1. (550 aa)
TCM_032899Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1279 aa)
TCM_030526Transducin/WD40 repeat-like superfamily protein. (313 aa)
TCM_034520Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (368 aa)
TCM_034708RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (328 aa)
TCM_031646Polynucleotidyl transferase, ribonuclease H-like superfamily protein, putative. (332 aa)
TCM_036535Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1168 aa)
TCM_042698XH/XS domain-containing protein isoform 1. (82 aa)
TCM_042431Chromatin remodeling complex subunit isoform 1. (1261 aa)
TCM_042767Uncharacterized protein. (302 aa)
TCM_042747XH/XS domain-containing protein, putative isoform 1. (640 aa)
TCM_043328Kow domain-containing transcription factor 1, putative. (1596 aa)
TCM_044507Tetratricopeptide repeat-like superfamily protein isoform 1. (761 aa)
TCM_045152DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1788 aa)
TCM_036301Chromatin remodeling 31, putative. (1003 aa)
TCM_044779Nuclear matrix protein-related isoform 1. (602 aa)
TCM_036589Cleavage stimulation factor 64 kDa subunit, putative. (521 aa)
TCM_042701XH/XS domain-containing protein, putative. (347 aa)
TCM_012022RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1149 aa)
TCM_012109MORC family CW-type zinc finger protein 3 isoform 1. (692 aa)
TCM_013468Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1; Belongs to the argonaute family. (1063 aa)
TCM_012853Uncharacterized protein. (91 aa)
TCM_012351Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (396 aa)
TCM_013315UPF0614 protein C14orf102, putative isoform 1. (1173 aa)
TCM_014698MORC family CW-type zinc finger protein 4, putative isoform 3. (828 aa)
TCM_014280RNA binding protein, putative isoform 2. (452 aa)
TCM_014786Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (995 aa)
TCM_012003BAH domain,TFIIS helical bundle-like domain isoform 1. (1630 aa)
TCM_012140Uncharacterized protein. (175 aa)
TCM_015190Cleavage and polyadenylation specificity factor subunit 2. (252 aa)
TCM_015419Defective in meristem silencing 3. (470 aa)
TCM_015436RNA-binding KH domain-containing protein. (675 aa)
TCM_015388Gamma-irradiation and mitomycin c induced 1-like protein. (460 aa)
TCM_014476SWAP/surp domain-containing protein. (994 aa)
TCM_016168DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1484 aa)
TCM_015090Arginine/serine-rich splicing factor 35. (372 aa)
TCM_027389RNAse THREE protein 1, putative isoform 1. (223 aa)
TCM_015191Cleavage and polyadenylation specificity factor subunit 2. (742 aa)
TCM_029341Argonaute protein group; Belongs to the argonaute family. (904 aa)
TCM_029273XS domain-containing / XS zinc finger domain-containing protein-related-like protein. (684 aa)
TCM_029333Argonaute protein group. (794 aa)
TCM_029345Argonaute protein group, putative isoform 1; Belongs to the argonaute family. (1016 aa)
TCM_029888Smr domain-containing protein YPL199C, putative isoform 2. (576 aa)
TCM_026937Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1. (954 aa)
TCM_027414XH/XS domain-containing protein. (633 aa)
TCM_030466DNA-directed RNA polymerase II subunit rpb4, putative isoform 1. (231 aa)
TCM_037008RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1197 aa)
TCM_036908DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1184 aa)
TCM_028873F9L1.16, putative isoform 1. (320 aa)
TCM_037410Ribonuclease III, putative isoform 1; Belongs to the helicase family. Dicer subfamily. (1639 aa)
TCM_029338Argonaute family protein, putative. (425 aa)
TCM_037973Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1; Belongs to the argonaute family. (943 aa)
TCM_038046RNA polymerase II transcription mediators isoform 1. (663 aa)
TCM_039820RNA-binding family protein, putative isoform 1. (675 aa)
TCM_037118Dicer-like protein, putative isoform 1; Belongs to the helicase family. Dicer subfamily. (1690 aa)
TCM_038703RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (805 aa)
TCM_040241ULP_PROTEASE domain-containing protein. (710 aa)
TCM_037622DWD hypersensitive to ABA 1. (371 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
TCM_041594PHD finger transcription factor, putative. (1274 aa)
TCM_042011C2H2 zinc-finger protein SERRATE isoform 1. (743 aa)
TCM_041832Methyl-CPG-binding domain protein 5, putative isoform 1. (232 aa)
TCM_042089Chromatin remodeling complex subunit, putative isoform 2. (2585 aa)
TCM_042027Argonaute family protein isoform 1. (913 aa)
TCM_042059Double-stranded RNA-binding protein 2. (434 aa)
TCM_042251RNA-directed DNA methylation 4, putative isoform 1. (400 aa)
TCM_041547Argonaute protein group; Belongs to the argonaute family. (988 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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