83 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_024999	Uncharacterized protein. (98 aa)
	TCM_028903	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (698 aa)
	TCM_028839	tRNAse Z4 isoform 1. (967 aa)
	TCM_027106	RNA helicase, ATP-dependent, SK12/DOB1 protein. (987 aa)
	TCM_015191	Cleavage and polyadenylation specificity factor subunit 2. (742 aa)
	TCM_014995	Cleavage and polyadenylation specificity factor 160 isoform 1. (1457 aa)
	TCM_015190	Cleavage and polyadenylation specificity factor subunit 2. (252 aa)
	TCM_014996	CPSF_A domain-containing protein. (225 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_015155	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (200 aa)
	TCM_014814	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (345 aa)
	TCM_015226	rRNA 2'-O-methyltransferase fibrillarin 2. (133 aa)
	TCM_045378	Beta-Casp domain-containing protein. (688 aa)
	TCM_014731	Polynucleotide adenylyltransferase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (528 aa)
	TCM_045257	Transducin/WD40 repeat-like superfamily protein. (722 aa)
	TCM_014303	Transducin/WD40 repeat-like superfamily protein isoform 1. (436 aa)
	TCM_000078	Polynucleotide adenylyltransferase family protein, putative; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (714 aa)
	TCM_001200	ENTH/VHS family protein isoform 1. (590 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_001258	RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
	TCM_001625	U6 snRNA-specific terminal uridylyltransferase 1, putative. (579 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_002265	Metallo-hydrolase/oxidoreductase superfamily protein. (353 aa)
	TCM_005167	Poly(A) RNA polymerase cid14, putative. (1347 aa)
	TCM_005103	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	TCM_005597	Nucleotidyltransferase family protein isoform 1. (1577 aa)
	TCM_006944	Cleavage and polyadenylation specificity factor 73-I. (694 aa)
	TCM_005208	3'-5'-exoribonuclease family protein isoform 1. (316 aa)
	TCM_005467	Nucleotidyltransferase family protein isoform 1. (722 aa)
	TCM_006006	ARM repeat superfamily protein, putative isoform 1. (1146 aa)
	TCM_010663	RNA-binding family protein isoform 1. (653 aa)
	TCM_011364	3'-5' exonuclease, putative. (959 aa)
	TCM_016930	Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
	TCM_017274	ENTH/VHS family protein isoform 1. (526 aa)
	TCM_018358	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (443 aa)
	TCM_018504	ATP-dependent RNA helicase SUPV3L1 isoform 2. (889 aa)
	TCM_010664	RNA-binding family protein isoform 4. (697 aa)
	TCM_043567	Ssu72-like family protein isoform 1. (193 aa)
	TCM_012351	Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (396 aa)
	TCM_012521	Poly(A) polymerase 1 isoform 1. (762 aa)
	TCM_045544	PAP/OAS1 substrate-binding domain superfamily, putative. (724 aa)
	TCM_036589	Cleavage stimulation factor 64 kDa subunit, putative. (521 aa)
	TCM_044785	Polynucleotide adenylyltransferase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (579 aa)
	TCM_044782	Exonuclease domain-containing protein. (414 aa)
	TCM_044507	Tetratricopeptide repeat-like superfamily protein isoform 1. (761 aa)
	TCM_044587	Uncharacterized protein. (247 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_034631	Uncharacterized protein. (68 aa)
	TCM_042737	Zinc finger protein, putative. (482 aa)
	TCM_036384	Polynucleotide adenylyltransferase family protein isoform 1; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (586 aa)
	TCM_031646	Polynucleotidyl transferase, ribonuclease H-like superfamily protein, putative. (332 aa)
	TCM_031492	Nucleotidyltransferase family protein isoform 2. (541 aa)
	TCM_019995	RNA recognition motif-containing protein, putative isoform 1. (970 aa)
	PHP	PAF1 complex component isoform 1. (413 aa)
	TCM_020670	ATP-dependent RNA and DNA helicase, putative isoform 4. (571 aa)
	TCM_021412	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (555 aa)
	TCM_021590	ARM repeat superfamily protein, putative isoform 1. (943 aa)
	TCM_019727	NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein, putative. (890 aa)
	TCM_021691	HEAT repeat-containing protein isoform 1. (1338 aa)
	TCM_047046	Poly(A) polymerase 1. (788 aa)
	TCM_022448	ENTH/VHS family protein, putative isoform 1. (1125 aa)
	TCM_024698	PCF11P-similar protein 4. (384 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_024703	PCF11P-similar protein 4. (392 aa)
	TCM_025384	Cleavage and polyadenylation specificity factor subunit 1. (314 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_025856	Polynucleotidyl transferase, putative isoform 1. (920 aa)
	TCM_025836	Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
	TCM_026648	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (80 aa)
	TCM_031111	tRNAse Z1 isoform 1. (300 aa)
	TCM_030647	RNA-binding family protein isoform 1. (709 aa)
	TCM_033469	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (82 aa)
	TCM_025390	Cleavage and polyadenylation specificity factor subunit 1. (310 aa)
	TCM_024460	NAP57 isoform 1. (614 aa)
	TCM_042278	Uncharacterized LOC18591082. (836 aa)
	TCM_042083	3'-5'-exoribonuclease family protein isoform 1. (256 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_040238	Nucleic acid binding protein, putative. (114 aa)
	TCM_037594	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (219 aa)
	TCM_037229	Poly(A) polymerase 1 isoform 1. (817 aa)
	TCM_037188	Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
	TCM_030180	PCF11P-similar protein 4, putative isoform 1. (1004 aa)
	TCM_016337	WD_REPEATS_REGION domain-containing protein. (145 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHP	TCM_001258	A0A061ELM1	A0A061DJ22	PAF1 complex component isoform 1.	RNA polymerase II, Rpb4, core protein isoform 1.	0.925
PHP	TCM_005103	A0A061ELM1	A0A061DTF7	PAF1 complex component isoform 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.725
PHP	TCM_021691	A0A061ELM1	A0A061EQB5	PAF1 complex component isoform 1.	HEAT repeat-containing protein isoform 1.	0.578
PHP	TCM_022448	A0A061ELM1	A0A061EUQ2	PAF1 complex component isoform 1.	ENTH/VHS family protein, putative isoform 1.	0.402
TCM_000078	TCM_012521	A0A061DGB6	A0A061FVR9	Polynucleotide adenylyltransferase family protein, putative; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Poly(A) polymerase 1 isoform 1.	0.438
TCM_001200	TCM_001258	A0A061DI68	A0A061DJ22	ENTH/VHS family protein isoform 1.	RNA polymerase II, Rpb4, core protein isoform 1.	0.757
TCM_001200	TCM_005103	A0A061DI68	A0A061DTF7	ENTH/VHS family protein isoform 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.419
TCM_001200	TCM_022448	A0A061DI68	A0A061EUQ2	ENTH/VHS family protein isoform 1.	ENTH/VHS family protein, putative isoform 1.	0.498
TCM_001200	TCM_024698	A0A061DI68	A0A061EWV3	ENTH/VHS family protein isoform 1.	PCF11P-similar protein 4.	0.498
TCM_001200	TCM_024703	A0A061DI68	A0A061EX93	ENTH/VHS family protein isoform 1.	PCF11P-similar protein 4.	0.498
TCM_001200	TCM_030180	A0A061DI68	A0A061GFH6	ENTH/VHS family protein isoform 1.	PCF11P-similar protein 4, putative isoform 1.	0.498
TCM_001200	TCM_043567	A0A061DI68	A0A061FVZ1	ENTH/VHS family protein isoform 1.	Ssu72-like family protein isoform 1.	0.753
TCM_001200	TCM_045378	A0A061DI68	A0A061FYS7	ENTH/VHS family protein isoform 1.	Beta-Casp domain-containing protein.	0.594
TCM_001258	PHP	A0A061DJ22	A0A061ELM1	RNA polymerase II, Rpb4, core protein isoform 1.	PAF1 complex component isoform 1.	0.925
TCM_001258	TCM_001200	A0A061DJ22	A0A061DI68	RNA polymerase II, Rpb4, core protein isoform 1.	ENTH/VHS family protein isoform 1.	0.757
TCM_001258	TCM_005103	A0A061DJ22	A0A061DTF7	RNA polymerase II, Rpb4, core protein isoform 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.887
TCM_001258	TCM_006006	A0A061DJ22	A0A061E3K4	RNA polymerase II, Rpb4, core protein isoform 1.	ARM repeat superfamily protein, putative isoform 1.	0.901
TCM_001258	TCM_017274	A0A061DJ22	A0A061ED05	RNA polymerase II, Rpb4, core protein isoform 1.	ENTH/VHS family protein isoform 1.	0.757
TCM_001258	TCM_021590	A0A061DJ22	A0A061EPT0	RNA polymerase II, Rpb4, core protein isoform 1.	ARM repeat superfamily protein, putative isoform 1.	0.901
TCM_001258	TCM_036589	A0A061DJ22	A0A061FSB3	RNA polymerase II, Rpb4, core protein isoform 1.	Cleavage stimulation factor 64 kDa subunit, putative.	0.459