13 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_005208	3'-5'-exoribonuclease family protein isoform 1. (316 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_035065	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	TCM_034795	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (1194 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_037188	Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_042083	3'-5'-exoribonuclease family protein isoform 1. (256 aa)
	TCM_041685	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (1441 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_001299	TCM_002348	A0A061DIE4	A0A061DL98	Ribosomal RNA processing 4.	Uncharacterized protein.	0.989
TCM_001299	TCM_005208	A0A061DIE4	A0A061E0L1	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.998
TCM_001299	TCM_012055	A0A061DIE4	A0A061G112	Ribosomal RNA processing 4.	PNAS-3 related isoform 1.	0.999
TCM_001299	TCM_024636	A0A061DIE4	A0A061EX61	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein.	0.999
TCM_001299	TCM_025463	A0A061DIE4	A0A061EZ56	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.993
TCM_001299	TCM_034795	A0A061DIE4	A0A061FMV5	Ribosomal RNA processing 4.	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1.	0.934
TCM_001299	TCM_035065	A0A061DIE4	A0A061FHS8	Ribosomal RNA processing 4.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.981
TCM_001299	TCM_037188	A0A061DIE4	A0A061GJP9	Ribosomal RNA processing 4.	Ribosomal protein S5 domain 2-like superfamily protein isoform 1.	0.999
TCM_001299	TCM_040771	A0A061DIE4	A0A061GTD2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein, putative isoform 1.	0.993
TCM_001299	TCM_041685	A0A061DIE4	A0A061GXA3	Ribosomal RNA processing 4.	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1.	0.943
TCM_001299	TCM_042083	A0A061DIE4	A0A061GX12	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.997
TCM_001299	TCM_043261	A0A061DIE4	A0A061FPF2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 7.	0.995
TCM_002348	TCM_001299	A0A061DL98	A0A061DIE4	Uncharacterized protein.	Ribosomal RNA processing 4.	0.989
TCM_002348	TCM_005208	A0A061DL98	A0A061E0L1	Uncharacterized protein.	3'-5'-exoribonuclease family protein isoform 1.	0.979
TCM_002348	TCM_012055	A0A061DL98	A0A061G112	Uncharacterized protein.	PNAS-3 related isoform 1.	0.987
TCM_002348	TCM_024636	A0A061DL98	A0A061EX61	Uncharacterized protein.	3'-5'-exoribonuclease family protein.	0.985
TCM_002348	TCM_025463	A0A061DL98	A0A061EZ56	Uncharacterized protein.	3'-5'-exoribonuclease family protein isoform 1.	0.958
TCM_002348	TCM_034795	A0A061DL98	A0A061FMV5	Uncharacterized protein.	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1.	0.812
TCM_002348	TCM_035065	A0A061DL98	A0A061FHS8	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.924
TCM_002348	TCM_037188	A0A061DL98	A0A061GJP9	Uncharacterized protein.	Ribosomal protein S5 domain 2-like superfamily protein isoform 1.	0.990