21 items (Theobroma cacao) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

Your Input:
	TCM_001607	Eukaryotic release factor 1 (ERF1) family protein. (116 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_005208	3'-5'-exoribonuclease family protein isoform 1. (316 aa)
	TCM_011364	3'-5' exonuclease, putative. (959 aa)
	TCM_022360	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (370 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_025327	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (377 aa)
	TCM_025856	Polynucleotidyl transferase, putative isoform 1. (920 aa)
	TCM_026410	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
	TCM_026742	Polynucleotidyl transferase isoform 1. (578 aa)
	TCM_033542	5'-3' exoribonuclease 3. (364 aa)
	TCM_042083	3'-5'-exoribonuclease family protein isoform 1. (256 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_037188	Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_012652	5'-3' exoribonuclease 3. (189 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_034205	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1110 aa)
	TCM_000043	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family. (938 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_000043	TCM_001299	A0A061DG42	A0A061DIE4	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	Ribosomal RNA processing 4.	0.984
TCM_000043	TCM_002348	A0A061DG42	A0A061DL98	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.924
TCM_000043	TCM_005208	A0A061DG42	A0A061E0L1	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein isoform 1.	0.972
TCM_000043	TCM_011364	A0A061DG42	A0A061E914	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5' exonuclease, putative.	0.962
TCM_000043	TCM_012055	A0A061DG42	A0A061G112	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	PNAS-3 related isoform 1.	0.981
TCM_000043	TCM_024636	A0A061DG42	A0A061EX61	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein.	0.982
TCM_000043	TCM_025463	A0A061DG42	A0A061EZ56	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein isoform 1.	0.964
TCM_000043	TCM_025856	A0A061DG42	A0A061EZH4	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	Polynucleotidyl transferase, putative isoform 1.	0.961
TCM_000043	TCM_037188	A0A061DG42	A0A061GJP9	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	Ribosomal protein S5 domain 2-like superfamily protein isoform 1.	0.981
TCM_000043	TCM_040771	A0A061DG42	A0A061GTD2	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein, putative isoform 1.	0.964
TCM_000043	TCM_042083	A0A061DG42	A0A061GX12	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein isoform 1.	0.966
TCM_000043	TCM_043261	A0A061DG42	A0A061FPF2	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	3'-5'-exoribonuclease family protein isoform 7.	0.963
TCM_001299	TCM_000043	A0A061DIE4	A0A061DG42	Ribosomal RNA processing 4.	Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family.	0.984
TCM_001299	TCM_002348	A0A061DIE4	A0A061DL98	Ribosomal RNA processing 4.	Uncharacterized protein.	0.989
TCM_001299	TCM_005208	A0A061DIE4	A0A061E0L1	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.998
TCM_001299	TCM_011364	A0A061DIE4	A0A061E914	Ribosomal RNA processing 4.	3'-5' exonuclease, putative.	0.992
TCM_001299	TCM_012055	A0A061DIE4	A0A061G112	Ribosomal RNA processing 4.	PNAS-3 related isoform 1.	0.999
TCM_001299	TCM_024636	A0A061DIE4	A0A061EX61	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein.	0.999
TCM_001299	TCM_025463	A0A061DIE4	A0A061EZ56	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.993
TCM_001299	TCM_025856	A0A061DIE4	A0A061EZH4	Ribosomal RNA processing 4.	Polynucleotidyl transferase, putative isoform 1.	0.992