20 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_014476	SWAP/surp domain-containing protein. (994 aa)
	TCM_042059	Double-stranded RNA-binding protein 2. (434 aa)
	TCM_042011	C2H2 zinc-finger protein SERRATE isoform 1. (743 aa)
	ABH1	ARM repeat superfamily protein isoform 1. (864 aa)
	TCM_038046	RNA polymerase II transcription mediators isoform 1. (663 aa)
	TCM_026937	Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1. (954 aa)
	TCM_015090	Arginine/serine-rich splicing factor 35. (372 aa)
	TCM_015436	RNA-binding KH domain-containing protein. (675 aa)
	TCM_036535	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1168 aa)
	TCM_034520	Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (368 aa)
	TCM_032899	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1279 aa)
	TCM_030975	SMAD/FHA domain-containing protein isoform 9. (463 aa)
	TCM_026442	DsRNA-binding protein 3. (546 aa)
	TCM_025865	Double-stranded-RNA-binding protein 4, putative. (448 aa)
	TCM_021138	DsRNA-binding protein 5, putative isoform 1. (566 aa)
	TCM_017279	DsRNA-binding protein 3 isoform 1. (497 aa)
	TCM_011260	THO complex subunit 2 isoform 1. (1853 aa)
	TCM_008184	CAP-binding protein 20 isoform 1. (309 aa)
	TCM_006691	Xap5 circadian timekeeper isoform 1. (337 aa)
	TCM_001077	Mediator of RNA polymerase II transcription subunit 18. (217 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABH1	TCM_008184	A0A061GUF2	A0A061E387	ARM repeat superfamily protein isoform 1.	CAP-binding protein 20 isoform 1.	0.999
ABH1	TCM_011260	A0A061GUF2	A0A061E8J4	ARM repeat superfamily protein isoform 1.	THO complex subunit 2 isoform 1.	0.975
ABH1	TCM_014476	A0A061GUF2	A0A061G5F9	ARM repeat superfamily protein isoform 1.	SWAP/surp domain-containing protein.	0.434
ABH1	TCM_015090	A0A061GUF2	A0A061G7R5	ARM repeat superfamily protein isoform 1.	Arginine/serine-rich splicing factor 35.	0.885
ABH1	TCM_015436	A0A061GUF2	A0A061G2I2	ARM repeat superfamily protein isoform 1.	RNA-binding KH domain-containing protein.	0.561
ABH1	TCM_030975	A0A061GUF2	A0A061F541	ARM repeat superfamily protein isoform 1.	SMAD/FHA domain-containing protein isoform 9.	0.889
ABH1	TCM_032899	A0A061GUF2	A0A061FAA5	ARM repeat superfamily protein isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.886
ABH1	TCM_036535	A0A061GUF2	A0A061FJW8	ARM repeat superfamily protein isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.886
ABH1	TCM_042011	A0A061GUF2	A0A061GWS2	ARM repeat superfamily protein isoform 1.	C2H2 zinc-finger protein SERRATE isoform 1.	0.995
TCM_001077	TCM_038046	A0A061DHX4	A0A061GM97	Mediator of RNA polymerase II transcription subunit 18.	RNA polymerase II transcription mediators isoform 1.	0.784
TCM_006691	TCM_032899	A0A061E0B7	A0A061FAA5	Xap5 circadian timekeeper isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.565
TCM_006691	TCM_036535	A0A061E0B7	A0A061FJW8	Xap5 circadian timekeeper isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.565
TCM_008184	ABH1	A0A061E387	A0A061GUF2	CAP-binding protein 20 isoform 1.	ARM repeat superfamily protein isoform 1.	0.999
TCM_008184	TCM_011260	A0A061E387	A0A061E8J4	CAP-binding protein 20 isoform 1.	THO complex subunit 2 isoform 1.	0.967
TCM_008184	TCM_014476	A0A061E387	A0A061G5F9	CAP-binding protein 20 isoform 1.	SWAP/surp domain-containing protein.	0.442
TCM_008184	TCM_015090	A0A061E387	A0A061G7R5	CAP-binding protein 20 isoform 1.	Arginine/serine-rich splicing factor 35.	0.913
TCM_008184	TCM_015436	A0A061E387	A0A061G2I2	CAP-binding protein 20 isoform 1.	RNA-binding KH domain-containing protein.	0.606
TCM_008184	TCM_030975	A0A061E387	A0A061F541	CAP-binding protein 20 isoform 1.	SMAD/FHA domain-containing protein isoform 9.	0.804
TCM_008184	TCM_032899	A0A061E387	A0A061FAA5	CAP-binding protein 20 isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.859
TCM_008184	TCM_036535	A0A061E387	A0A061FJW8	CAP-binding protein 20 isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1.	0.859