69 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001258	RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
	TCM_001608	DEAD domain-containing protein. (162 aa)
	TCM_005373	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family. (501 aa)
	TCM_002334	Nucleoporin, Nup133/Nup155-like, putative isoform 3. (1331 aa)
	TCM_005726	Mago nashi family protein. (151 aa)
	TCM_006420	Partner of Y14-MAGO isoform 1. (232 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_007532	Transducin/WD40 repeat-like superfamily protein. (350 aa)
	TCM_005631	Structural constituent of nuclear pore isoform 1. (778 aa)
	TCM_008511	Uncharacterized protein. (93 aa)
	TCM_008907	Uncharacterized protein isoform 1. (403 aa)
	TCM_011260	THO complex subunit 2 isoform 1. (1853 aa)
	TCM_010631	Nucleoporin GLE1, putative isoform 1. (673 aa)
	TCM_011050	Nucleoporin 155. (1494 aa)
	TCM_007746	Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
	TCM_009522	Uncharacterized protein. (108 aa)
	TCM_016967	Embryo defective 3012, putative isoform 2. (1949 aa)
	TCM_017190	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (111 aa)
	TCM_017425	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (543 aa)
	TCM_011094	CCCH-type zinc finger family protein, putative. (751 aa)
	TCM_020966	Uncharacterized protein. (98 aa)
	TCM_020965	RNA-binding family protein isoform 1. (533 aa)
	TCM_021657	Ran-binding protein 1 b isoform 1. (226 aa)
	TCM_022057	Uncharacterized protein isoform 1. (221 aa)
	TCM_021972	RNA-binding family protein. (240 aa)
	LOS4	P-loop containing nucleoside triphosphate hydrolases superfamily protein. (502 aa)
	TCM_021077	SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 1. (1610 aa)
	TCM_024599	Nuclear pore protein. (865 aa)
	TCM_025439	Exportin 1A isoform 3. (1077 aa)
	TCM_024170	Transducin/WD40 repeat-like superfamily protein isoform 1. (433 aa)
	TCM_025487	Tho complex subunit 7/Mft1p. (241 aa)
	TCM_033594	Nucleoprotein TPR, putative isoform 2. (2091 aa)
	TCM_030526	Transducin/WD40 repeat-like superfamily protein. (313 aa)
	TCM_033823	THO complex subunit 5 B. (842 aa)
	TCM_033734	RNA-binding family protein, putative isoform 1. (262 aa)
	TCM_042816	RNA-binding family protein, putative isoform 1. (299 aa)
	TCM_044382	Uncharacterized protein. (1417 aa)
	TCM_044779	Nuclear matrix protein-related isoform 1. (602 aa)
	TCM_044642	SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 2. (436 aa)
	TCM_042531	Nuclear pore complex protein-related isoform 1. (862 aa)
	TCM_012039	Deletion of SUV3 suppressor 1(I) isoform 1. (74 aa)
	TCM_013541	Homeobox-leucine zipper protein ATHB-15, putative isoform 1. (489 aa)
	TCM_016170	Pleckstrin domain superfamily protein isoform 1. (446 aa)
	TCM_027151	DEAD/DEAH box RNA helicase family protein isoform 1. (427 aa)
	TCM_015027	Uncharacterized protein. (70 aa)
	TCM_027395	Transducin/WD40 repeat-like superfamily protein isoform 2. (359 aa)
	TCM_015576	Nucleoporin autopeptidase, putative. (1009 aa)
	TCM_028633	CASC3/Barentsz eIF4AIII binding, putative isoform 1. (711 aa)
	TCM_027396	Suppressor of auxin resistance 3. (1069 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_028019	Suppressor of auxin resistance1, putative. (1488 aa)
	TCM_029190	Uncharacterized protein isoform 2. (1375 aa)
	TCM_028859	Nuclear pore complex protein NUP35. (329 aa)
	TCM_029188	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1000 aa)
	TCM_028672	NUP50 protein, putative. (459 aa)
	TCM_037199	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (714 aa)
	TCM_037013	DEAD/DEAH box RNA helicase family protein isoform 1. (485 aa)
	TCM_037016	Concanavalin A-like lectin protein kinase family protein, putative. (638 aa)
	TCM_037921	Uncharacterized protein isoform 1. (715 aa)
	TCM_037672	Proteasome family protein. (413 aa)
	TCM_038042	Nucleic acid binding protein, putative. (539 aa)
	TCM_038072	Uncharacterized protein isoform 1. (1885 aa)
	TCM_038437	Transducin/WD40 repeat-like superfamily protein isoform 1. (414 aa)
	TCM_037622	DWD hypersensitive to ABA 1. (371 aa)
	TCM_040864	RNA-binding family protein. (199 aa)
	ABH1	ARM repeat superfamily protein isoform 1. (864 aa)
	TCM_042170	Ran-binding protein 1 b. (224 aa)
	TCM_041883	RNA-binding family protein. (241 aa)
	TCM_000528	Hydroxyproline-rich glycoprotein family protein. (486 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABH1	TCM_005373	A0A061GUF2	A0A061DTF1	ARM repeat superfamily protein isoform 1.	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	0.534
ABH1	TCM_005726	A0A061GUF2	A0A061DVQ4	ARM repeat superfamily protein isoform 1.	Mago nashi family protein.	0.902
ABH1	TCM_006150	A0A061GUF2	A0A061DY66	ARM repeat superfamily protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.840
ABH1	TCM_007532	A0A061GUF2	A0A061E1L2	ARM repeat superfamily protein isoform 1.	Transducin/WD40 repeat-like superfamily protein.	0.806
ABH1	TCM_007746	A0A061GUF2	A0A061EA73	ARM repeat superfamily protein isoform 1.	Eukaryotic initiation factor 4A-III isoform 1.	0.857
ABH1	TCM_008511	A0A061GUF2	A0A061E3Z0	ARM repeat superfamily protein isoform 1.	Uncharacterized protein.	0.608
ABH1	TCM_008907	A0A061GUF2	A0A061E6B8	ARM repeat superfamily protein isoform 1.	Uncharacterized protein isoform 1.	0.821
ABH1	TCM_009522	A0A061GUF2	A0A061ECP3	ARM repeat superfamily protein isoform 1.	Uncharacterized protein.	0.608
ABH1	TCM_010631	A0A061GUF2	A0A061E8P3	ARM repeat superfamily protein isoform 1.	Nucleoporin GLE1, putative isoform 1.	0.846
ABH1	TCM_011050	A0A061GUF2	A0A061E9P5	ARM repeat superfamily protein isoform 1.	Nucleoporin 155.	0.838
ABH1	TCM_011260	A0A061GUF2	A0A061E8J4	ARM repeat superfamily protein isoform 1.	THO complex subunit 2 isoform 1.	0.975
ABH1	TCM_015027	A0A061GUF2	A0A061G7J5	ARM repeat superfamily protein isoform 1.	Uncharacterized protein.	0.608
ABH1	TCM_015576	A0A061GUF2	A0A061G9T0	ARM repeat superfamily protein isoform 1.	Nucleoporin autopeptidase, putative.	0.650
ABH1	TCM_016170	A0A061GUF2	A0A061G427	ARM repeat superfamily protein isoform 1.	Pleckstrin domain superfamily protein isoform 1.	0.761
ABH1	TCM_021077	A0A061GUF2	A0A061EVK2	ARM repeat superfamily protein isoform 1.	SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 1.	0.400
ABH1	TCM_021657	A0A061GUF2	A0A061EQN3	ARM repeat superfamily protein isoform 1.	Ran-binding protein 1 b isoform 1.	0.601
ABH1	TCM_021972	A0A061GUF2	A0A061ET42	ARM repeat superfamily protein isoform 1.	RNA-binding family protein.	0.888
ABH1	TCM_022057	A0A061GUF2	A0A061EST1	ARM repeat superfamily protein isoform 1.	Uncharacterized protein isoform 1.	0.769
ABH1	TCM_024599	A0A061GUF2	A0A061EVW7	ARM repeat superfamily protein isoform 1.	Nuclear pore protein.	0.835
ABH1	TCM_025439	A0A061GUF2	A0A061EZF8	ARM repeat superfamily protein isoform 1.	Exportin 1A isoform 3.	0.579