STRINGSTRING
TCM_021457 TCM_021457 TCM_022706 TCM_022706 TCM_024636 TCM_024636 TCM_025463 TCM_025463 TCM_022844 TCM_022844 TCM_026449 TCM_026449 TCM_026461 TCM_026461 TCM_024996 TCM_024996 TCM_026258 TCM_026258 TCM_032442 TCM_032442 TCM_034910 TCM_034910 TCM_032439 TCM_032439 TCM_035065 TCM_035065 TCM_043261 TCM_043261 TCM_043141 TCM_043141 TCM_043331 TCM_043331 LSM3 LSM3 TCM_014910 TCM_014910 TCM_012055 TCM_012055 TCM_016168 TCM_016168 TCM_027415 TCM_027415 TCM_027418 TCM_027418 TCM_027659 TCM_027659 TCM_027764 TCM_027764 LSM1 LSM1 TCM_026937 TCM_026937 TCM_027417 TCM_027417 LSM1-2 LSM1-2 TCM_038064 TCM_038064 TCM_039334 TCM_039334 TCM_037083 TCM_037083 TCM_039865 TCM_039865 TCM_040771 TCM_040771 TCM_041300 TCM_041300 TCM_041752 TCM_041752 TCM_041933 TCM_041933 TCM_039931 TCM_039931 TCM_002348 TCM_002348 TCM_002009 TCM_002009 TCM_001258 TCM_001258 TCM_001299 TCM_001299 TCM_005467 TCM_005467 TCM_005611 TCM_005611 LSM5 LSM5 TCM_006167 TCM_006167 TCM_008783 TCM_008783 TCM_006895 TCM_006895 TCM_019826 TCM_019826
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_021457Yth domain-containing protein, putative isoform 1. (659 aa)
TCM_022706mRNA-decapping enzyme-like protein. (376 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_022844Polynucleotidyl transferase. (285 aa)
TCM_026449Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
TCM_026461Evolutionarily conserved C-terminal region 2, putative isoform 1. (622 aa)
TCM_024996DNAse I-like superfamily protein isoform 1. (602 aa)
TCM_026258F-box associated ubiquitination effector family protein, putative. (410 aa)
TCM_032442Uncharacterized protein. (512 aa)
TCM_034910Carbon catabolite repressor protein 4, putative isoform 1. (584 aa)
TCM_032439Topoisomerase II-associated protein PAT1, putative. (841 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
TCM_043141Decapping 2 isoform 1. (321 aa)
TCM_043331Polynucleotidyl transferase, putative. (252 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_014910Ccr4-not transcription complex, putative. (2253 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_016168DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1484 aa)
TCM_027415Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027418Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027659Evolutionarily conserved C-terminal region 5 isoform 6. (652 aa)
TCM_027764Pumilio, putative isoform 1. (1005 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_026937Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1. (954 aa)
TCM_027417CCR4-associated factor 1. (356 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_038064Pentatricopeptide repeat (PPR) superfamily protein, putative. (771 aa)
TCM_039334Pumilio 5, putative isoform 3. (1029 aa)
TCM_037083Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
TCM_039865Evolutionarily conserved C-terminal region 2 isoform 1. (742 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_041300Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
TCM_041933NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
TCM_039931YTH domain-containing protein. (352 aa)
TCM_002348Uncharacterized protein. (108 aa)
TCM_002009Topoisomerase II-associated protein PAT1, putative isoform 1. (798 aa)
TCM_001258RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_005467Nucleotidyltransferase family protein isoform 1. (722 aa)
TCM_005611Ccr4-not transcription complex, putative isoform 1. (2413 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_006167Yth domain-containing protein, putative isoform 1. (573 aa)
TCM_008783Evolutionarily conserved C-terminal region 5-like protein isoform 1. (634 aa)
TCM_006895Polynucleotidyl transferase, putative. (205 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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