58 items (Theobroma cacao) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_000407	U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	TCM_003910	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (815 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	TCM_002491	Sm domain-containing protein. (359 aa)
	TCM_004356	Splicing factor Prp18 family protein isoform 1. (415 aa)
	TCM_046691	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
	TCM_004673	Spliceosomal protein U1A. (260 aa)
	TCM_007490	CD2-binding protein-related, putative. (419 aa)
	TCM_007427	Splicing factor, putative. (1266 aa)
	TCM_007259	Pre-mRNA-processing protein 40B, putative. (1025 aa)
	TCM_008068	Pre-mRNA splicing factor-related. (1033 aa)
	TCM_007721	mRNA splicing factor isoform 1. (166 aa)
	TCM_010249	Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1. (485 aa)
	TCM_009497	Spliceosomal U5 snRNP-specific 15 kDa protein, putative. (145 aa)
	TCM_011316	SWAP/surp domain-containing protein / ubiquitin family protein. (818 aa)
	TCM_007489	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. (572 aa)
	TCM_017427	Uncharacterized protein. (67 aa)
	TCM_011273	Small nuclear ribonucleoprotein Sm D2. (107 aa)
	TCM_019826	Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
	TCM_020910	Uncharacterized protein. (149 aa)
	TCM_021554	RNA-binding family protein. (338 aa)
	TCM_022100	Pre-mRNA splicing factor-related. (116 aa)
	TCM_022302	Hydroxyproline-rich glycoprotein family protein. (338 aa)
	TCM_022624	Small nuclear ribonucleoprotein G. (80 aa)
	TCM_024237	Uncharacterized protein. (132 aa)
	TCM_025029	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1391 aa)
	TCM_025128	RNA-binding protein Luc7-like 1 isoform 1. (413 aa)
	TCM_026747	C2H2 and C2HC zinc fingers superfamily protein isoform 1. (202 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	TCM_031877	mRNA splicing factor, thioredoxin-like U5 snRNP. (151 aa)
	TCM_031736	JHL23J11.4 protein isoform 1. (470 aa)
	TCM_032152	U4/U6.U5 tri-snRNP-associated protein 1 isoform 1. (907 aa)
	TCM_032398	PHF5-like protein. (110 aa)
	TCM_034385	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	TCM_034659	Pre-mRNA-processing protein 40A isoform 3. (1041 aa)
	TCM_042977	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1214 aa)
	TCM_043010	Pre-mRNA-splicing factor 3 isoform 1. (762 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	TCM_043735	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
	TCM_014922	LUC7 N_terminus domain-containing protein isoform 1. (351 aa)
	TCM_026981	Small nuclear ribonucleoprotein associated protein B. (291 aa)
	TCM_027096	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (114 aa)
	TCM_026952	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	TCM_027619	Uncharacterized protein. (96 aa)
	TCM_029561	Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative. (1166 aa)
	TCM_027212	Pre-mRNA-processing-splicing factor isoform 1. (2354 aa)
	TCM_030335	Ubiquitin-specific protease family C19-related protein isoform 1. (461 aa)
	TCM_029917	Proline-rich spliceosome-associated family protein isoform 1. (606 aa)
	TCM_038062	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	TCM_038810	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	TCM_040897	RNA-binding (RRM/RBD/RNP motifs) family protein. (124 aa)
	TCM_040677	RNA-binding family protein isoform 1. (455 aa)
	TCM_041395	Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
	TCM_041636	RNA recognition motif-containing protein, putative. (385 aa)
	TCM_041599	PHF5-like protein. (110 aa)
	TCM_039217	Small nuclear ribonucleoprotein F. (88 aa)
	TCM_042243	U2 small nuclear ribonucleoprotein B. (232 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A061FQC9	A0A061DSH4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A061FQC9	A0A061DMN8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A061FQC9	A0A061F6F2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	TCM_002491	A0A061FQC9	A0A061DUE5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.977
LSM3	TCM_004356	A0A061FQC9	A0A061DXM4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor Prp18 family protein isoform 1.	0.733
LSM3	TCM_004673	A0A061FQC9	A0A061DYM4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal protein U1A.	0.806
LSM3	TCM_007427	A0A061FQC9	A0A061E1B9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor, putative.	0.918
LSM3	TCM_007489	A0A061FQC9	A0A061E961	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related.	0.961
LSM3	TCM_007721	A0A061FQC9	A0A061E428	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA splicing factor isoform 1.	0.939
LSM3	TCM_008068	A0A061FQC9	A0A061E2W4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA splicing factor-related.	0.960
LSM3	TCM_009497	A0A061FQC9	A0A061E5Z9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal U5 snRNP-specific 15 kDa protein, putative.	0.939
LSM3	TCM_010249	A0A061FQC9	A0A061E5S9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1.	0.989
LSM3	TCM_011273	A0A061FQC9	A0A061EGD1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
LSM3	TCM_011316	A0A061FQC9	A0A061E8Y3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SWAP/surp domain-containing protein / ubiquitin family protein.	0.853
LSM3	TCM_019826	A0A061FQC9	A0A061EIY5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein family protein isoform 1.	0.999
LSM3	TCM_020910	A0A061FQC9	A0A061EMJ3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.889
LSM3	TCM_022100	A0A061FQC9	A0A061ET01	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA splicing factor-related.	0.917
LSM3	TCM_022302	A0A061FQC9	A0A061ET11	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Hydroxyproline-rich glycoprotein family protein.	0.923
LSM3	TCM_022624	A0A061FQC9	A0A061EV54	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.995
LSM3	TCM_025029	A0A061FQC9	A0A061EY72	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1.	0.841