26 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	TCM_019826	Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	TCM_002491	Sm domain-containing protein. (359 aa)
	TCM_004356	Splicing factor Prp18 family protein isoform 1. (415 aa)
	TCM_046691	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
	TCM_008068	Pre-mRNA splicing factor-related. (1033 aa)
	TCM_007721	mRNA splicing factor isoform 1. (166 aa)
	TCM_010249	Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1. (485 aa)
	TCM_009497	Spliceosomal U5 snRNP-specific 15 kDa protein, putative. (145 aa)
	TCM_007489	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. (572 aa)
	TCM_011273	Small nuclear ribonucleoprotein Sm D2. (107 aa)
	TCM_022100	Pre-mRNA splicing factor-related. (116 aa)
	TCM_022624	Small nuclear ribonucleoprotein G. (80 aa)
	TCM_026747	C2H2 and C2HC zinc fingers superfamily protein isoform 1. (202 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	TCM_031877	mRNA splicing factor, thioredoxin-like U5 snRNP. (151 aa)
	TCM_032152	U4/U6.U5 tri-snRNP-associated protein 1 isoform 1. (907 aa)
	TCM_034385	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	TCM_043010	Pre-mRNA-splicing factor 3 isoform 1. (762 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	TCM_026981	Small nuclear ribonucleoprotein associated protein B. (291 aa)
	TCM_027096	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (114 aa)
	TCM_038062	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	TCM_038810	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	TCM_041395	Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A061FQC9	A0A061DSH4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A061FQC9	A0A061DMN8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A061FQC9	A0A061F6F2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	TCM_002491	A0A061FQC9	A0A061DUE5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.977
LSM3	TCM_004356	A0A061FQC9	A0A061DXM4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor Prp18 family protein isoform 1.	0.733
LSM3	TCM_007489	A0A061FQC9	A0A061E961	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related.	0.961
LSM3	TCM_007721	A0A061FQC9	A0A061E428	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA splicing factor isoform 1.	0.939
LSM3	TCM_008068	A0A061FQC9	A0A061E2W4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA splicing factor-related.	0.960
LSM3	TCM_009497	A0A061FQC9	A0A061E5Z9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal U5 snRNP-specific 15 kDa protein, putative.	0.939
LSM3	TCM_010249	A0A061FQC9	A0A061E5S9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1.	0.989
LSM3	TCM_011273	A0A061FQC9	A0A061EGD1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
LSM3	TCM_019826	A0A061FQC9	A0A061EIY5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein family protein isoform 1.	0.999
LSM3	TCM_022100	A0A061FQC9	A0A061ET01	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA splicing factor-related.	0.917
LSM3	TCM_022624	A0A061FQC9	A0A061EV54	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.995
LSM3	TCM_026747	A0A061FQC9	A0A061F406	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	C2H2 and C2HC zinc fingers superfamily protein isoform 1.	0.968
LSM3	TCM_026981	A0A061FQC9	A0A061G6W4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein associated protein B.	0.993
LSM3	TCM_027096	A0A061FQC9	A0A061G7A6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
LSM3	TCM_031877	A0A061FQC9	A0A061F8G2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA splicing factor, thioredoxin-like U5 snRNP.	0.939
LSM3	TCM_032152	A0A061FQC9	A0A061F934	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6.U5 tri-snRNP-associated protein 1 isoform 1.	0.991
LSM3	TCM_034385	A0A061FQC9	A0A061FED3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.993