STRINGSTRING
LSM3 LSM3 TCM_032439 TCM_032439 TCM_032442 TCM_032442 TCM_026410 TCM_026410 TCM_022706 TCM_022706 TCM_019522 TCM_019522 TCM_019826 TCM_019826 TCM_011884 TCM_011884 LSM5 LSM5 TCM_002009 TCM_002009 TCM_043141 TCM_043141 TCM_012240 TCM_012240 TCM_015825 TCM_015825 TCM_015830 TCM_015830 TCM_015822 TCM_015822 TCM_016705 TCM_016705 LSM1 LSM1 LSM1-2 LSM1-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_032439Topoisomerase II-associated protein PAT1, putative. (841 aa)
TCM_032442Uncharacterized protein. (512 aa)
TCM_0264105'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
TCM_022706mRNA-decapping enzyme-like protein. (376 aa)
TCM_019522Decapping 5, putative isoform 2. (601 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_011884Decapping 5. (673 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_002009Topoisomerase II-associated protein PAT1, putative isoform 1. (798 aa)
TCM_043141Decapping 2 isoform 1. (321 aa)
TCM_012240Binding-like protein isoform 1. (723 aa)
TCM_015825Glycine-rich-like protein. (369 aa)
TCM_015830Uncharacterized protein. (223 aa)
TCM_015822Glycine-rich protein isoform 1. (518 aa)
TCM_016705Decapping 5-like, putative isoform 1. (574 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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