26 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_000798	Plant U-box 49 isoform 1. (692 aa)
	TCM_004263	Beige/BEACH domain,WD domain, G-beta repeat protein. (3597 aa)
	TCM_006385	Oxidoreductase, putative. (455 aa)
	TCM_029168	Uncharacterized protein. (272 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_015354	Polypyrimidine tract-binding protein isoform 1. (463 aa)
	TCM_012003	BAH domain,TFIIS helical bundle-like domain isoform 1. (1630 aa)
	TCM_000216	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1. (517 aa)
	TCM_042031	Lupus la ribonucleoprotein, putative isoform 3. (893 aa)
	TCM_041605	Zinc finger family protein. (709 aa)
	TCM_030472	Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1420 aa)
	TCM_037503	Uncharacterized protein. (353 aa)
	TCM_043141	Decapping 2 isoform 1. (321 aa)
	TCM_042737	Zinc finger protein, putative. (482 aa)
	TCM_042489	Zinc finger family protein. (792 aa)
	TCM_035065	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	TCM_035648	Polypyrimidine tract-binding protein 3. (718 aa)
	TCM_034020	PERQ amino acid-rich with GYF domain-containing protein 2, putative isoform 1. (1828 aa)
	TCM_030550	Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1390 aa)
	TCM_026410	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
	TCM_022706	mRNA-decapping enzyme-like protein. (376 aa)
	TCM_021679	ANK_REP_REGION domain-containing protein. (194 aa)
	TCM_021241	Uncharacterized protein isoform 1. (145 aa)
	TCM_018589	Polypyrimidine tract-binding protein 1 isoform 1. (466 aa)
	TCM_005467	Nucleotidyltransferase family protein isoform 1. (722 aa)
	TCM_004326	Uncharacterized protein isoform 1. (287 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_004263	TCM_022706	A0A061DX95	A0A061EVA3	Beige/BEACH domain,WD domain, G-beta repeat protein.	mRNA-decapping enzyme-like protein.	0.661
TCM_004263	TCM_043141	A0A061DX95	A0A061FPQ5	Beige/BEACH domain,WD domain, G-beta repeat protein.	Decapping 2 isoform 1.	0.536
TCM_004326	TCM_021241	A0A061DXK3	A0A061END9	Uncharacterized protein isoform 1.	Uncharacterized protein isoform 1.	0.443
TCM_005467	TCM_035065	A0A061E1N6	A0A061FHS8	Nucleotidyltransferase family protein isoform 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.594
TCM_015799	TCM_022706	A0A061G3G4	A0A061EVA3	Regulator of nonsense transcripts 1.	mRNA-decapping enzyme-like protein.	0.958
TCM_015799	TCM_026410	A0A061G3G4	A0A061F3C1	Regulator of nonsense transcripts 1.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	0.555
TCM_015799	TCM_030472	A0A061G3G4	A0A061GPJ1	Regulator of nonsense transcripts 1.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.442
TCM_015799	TCM_030550	A0A061G3G4	A0A061FBM7	Regulator of nonsense transcripts 1.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.442
TCM_015799	TCM_043141	A0A061G3G4	A0A061FPQ5	Regulator of nonsense transcripts 1.	Decapping 2 isoform 1.	0.922
TCM_021241	TCM_004326	A0A061END9	A0A061DXK3	Uncharacterized protein isoform 1.	Uncharacterized protein isoform 1.	0.443
TCM_022706	TCM_004263	A0A061EVA3	A0A061DX95	mRNA-decapping enzyme-like protein.	Beige/BEACH domain,WD domain, G-beta repeat protein.	0.661
TCM_022706	TCM_015799	A0A061EVA3	A0A061G3G4	mRNA-decapping enzyme-like protein.	Regulator of nonsense transcripts 1.	0.958
TCM_022706	TCM_026410	A0A061EVA3	A0A061F3C1	mRNA-decapping enzyme-like protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	0.559
TCM_022706	TCM_030472	A0A061EVA3	A0A061GPJ1	mRNA-decapping enzyme-like protein.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.974
TCM_022706	TCM_030550	A0A061EVA3	A0A061FBM7	mRNA-decapping enzyme-like protein.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.974
TCM_022706	TCM_035065	A0A061EVA3	A0A061FHS8	mRNA-decapping enzyme-like protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.716
TCM_022706	TCM_043141	A0A061EVA3	A0A061FPQ5	mRNA-decapping enzyme-like protein.	Decapping 2 isoform 1.	0.997
TCM_026410	TCM_015799	A0A061F3C1	A0A061G3G4	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	Regulator of nonsense transcripts 1.	0.555
TCM_026410	TCM_022706	A0A061F3C1	A0A061EVA3	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	mRNA-decapping enzyme-like protein.	0.559
TCM_026410	TCM_035065	A0A061F3C1	A0A061FHS8	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.466