STRINGSTRING
TCM_018075 TCM_018075 TCM_000427 TCM_000427 TCM_000407 TCM_000407 TCM_001042 TCM_001042 TCM_000813 TCM_000813 TCM_001446 TCM_001446 TCM_000936 TCM_000936 TCM_001356 TCM_001356 TCM_001875 TCM_001875 TCM_001641 TCM_001641 TCM_001431 TCM_001431 TCM_002768 TCM_002768 TCM_002312 TCM_002312 TCM_003782 TCM_003782 TCM_003387 TCM_003387 TCM_003910 TCM_003910 TCM_002491 TCM_002491 TCM_006067 TCM_006067 TCM_006418 TCM_006418 TCM_004356 TCM_004356 TCM_046691 TCM_046691 TCM_006604 TCM_006604 TCM_005096 TCM_005096 TCM_007486 TCM_007486 TCM_007427 TCM_007427 TCM_005487 TCM_005487 TCM_011316 TCM_011316 TCM_007426 TCM_007426 TCM_008921 TCM_008921 TCM_011876 TCM_011876 TCM_017564 TCM_017564 TCM_017602 TCM_017602 TCM_017709 TCM_017709 TCM_017644 TCM_017644 TCM_018339 TCM_018339 TCM_018355 TCM_018355 TCM_011738 TCM_011738 TCM_020136 TCM_020136 TCM_019842 TCM_019842 TCM_020801 TCM_020801 TCM_017921 TCM_017921 TCM_020910 TCM_020910 TCM_020891 TCM_020891 TCM_019401 TCM_019401 TCM_020986 TCM_020986 TCM_019804 TCM_019804 TCM_022039 TCM_022039 TCM_022302 TCM_022302 TCM_020947 TCM_020947 TCM_024438 TCM_024438 TCM_025838 TCM_025838 TCM_025638 TCM_025638 TCM_026027 TCM_026027 TCM_026814 TCM_026814 TCM_026832 TCM_026832 TCM_026841 TCM_026841 TCM_031736 TCM_031736 TCM_032398 TCM_032398 TCM_033687 TCM_033687 TCM_034385 TCM_034385 TCM_031380 TCM_031380 TCM_034612 TCM_034612 TCM_035719 TCM_035719 TCM_035735 TCM_035735 TCM_034316 TCM_034316 TCM_043024 TCM_043024 TCM_043295 TCM_043295 TCM_043209 TCM_043209 TCM_043260 TCM_043260 TCM_043293 TCM_043293 TCM_044376 TCM_044376 TCM_044549 TCM_044549 TCM_044159 TCM_044159 TCM_044552 TCM_044552 TCM_045455 TCM_045455 TCM_013623 TCM_013623 TCM_043735 TCM_043735 TCM_044534 TCM_044534 TCM_015504 TCM_015504 TCM_012831 TCM_012831 TCM_015872 TCM_015872 TCM_016407 TCM_016407 TCM_014895 TCM_014895 TCM_015090 TCM_015090 TCM_027144 TCM_027144 TCM_015383 TCM_015383 TCM_029559 TCM_029559 TCM_029561 TCM_029561 TCM_027427 TCM_027427 TCM_029904 TCM_029904 TCM_029917 TCM_029917 TCM_028037 TCM_028037 TCM_037328 TCM_037328 TCM_037653 TCM_037653 TCM_037829 TCM_037829 TCM_029973 TCM_029973 TCM_038277 TCM_038277 TCM_037256 TCM_037256 TCM_040215 TCM_040215 TCM_040224 TCM_040224 TCM_040897 TCM_040897 TCM_041395 TCM_041395 TCM_041484 TCM_041484 TCM_041599 TCM_041599 TCM_041684 TCM_041684 TCM_038764 TCM_038764 TCM_039496 TCM_039496 TCM_045682 TCM_045682
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_018075Uncharacterized protein. (194 aa)
TCM_000427U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (585 aa)
TCM_000407U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
TCM_001042LMBR1-like membrane protein isoform 1. (728 aa)
TCM_000813CCCH-type zinc fingerfamily protein with RNA-binding domain. (495 aa)
TCM_001446Tetratricopeptide repeat (TPR)-like superfamily protein, putative. (167 aa)
TCM_000936RRM domain-containing protein. (582 aa)
TCM_001356Pre-mRNA-splicing factor isy-1. (301 aa)
TCM_001875Carbohydrate-binding X8 domain superfamily protein, putative isoform 1. (234 aa)
TCM_001641ATPase E1. (172 aa)
TCM_001431Ribosomal protein S5/Elongation factor G/III/V family protein. (1027 aa)
TCM_002768Uncharacterized protein. (149 aa)
TCM_002312DGCR14-related. (652 aa)
TCM_003782Uncharacterized protein. (130 aa)
TCM_003387Uncharacterized protein. (102 aa)
TCM_003910Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (815 aa)
TCM_002491Sm domain-containing protein. (359 aa)
TCM_006067BCL-2-associated athanogene 3. (262 aa)
TCM_006418SER/ARG-rich protein 34A, putative isoform 1. (285 aa)
TCM_004356Splicing factor Prp18 family protein isoform 1. (415 aa)
TCM_046691Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
TCM_006604GCIP-interacting family protein isoform 1. (307 aa)
TCM_005096RNA-binding family protein isoform 1. (283 aa)
TCM_007486Serine/arginine rich splicing factor, putative isoform 1. (268 aa)
TCM_007427Splicing factor, putative. (1266 aa)
TCM_005487Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
TCM_011316SWAP/surp domain-containing protein / ubiquitin family protein. (818 aa)
TCM_007426LMBR1-like membrane protein isoform 2. (725 aa)
TCM_008921Uncharacterized protein. (111 aa)
TCM_011876Family of Uncharacterized protein function (DUF572). (310 aa)
TCM_017564Suppressor of abi3-5 isoform 1. (1069 aa)
TCM_017602ARM repeat superfamily protein isoform 1. (558 aa)
TCM_017709PRP38 family protein isoform 1. (446 aa)
TCM_017644Uncharacterized protein. (209 aa)
TCM_018339CCHC-type domain-containing protein. (337 aa)
TCM_018355Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (478 aa)
TCM_011738Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1. (267 aa)
TCM_020136Ubiquitin carboxyl-terminal hydrolase family protein. (488 aa)
TCM_019842Family of Uncharacterized protein function. (315 aa)
TCM_020801CwfJ-like family protein, putative isoform 1. (777 aa)
TCM_017921RCD one 1-like protein. (206 aa)
TCM_020910Uncharacterized protein. (149 aa)
TCM_020891Pre-mRNA splicing Prp18-interacting factor isoform 1. (536 aa)
TCM_019401Uncharacterized protein. (167 aa)
TCM_020986MOS4-associated complex 3A. (523 aa)
TCM_019804CBF1-interacting co-repressor CIR isoform 1. (474 aa)
TCM_022039RNA-binding family protein with retrovirus zinc finger-like domain, putative. (312 aa)
TCM_022302Hydroxyproline-rich glycoprotein family protein. (338 aa)
TCM_020947Splicing factor U2AF 50 kDa subunit, putative. (1032 aa)
TCM_024438Uncharacterized protein. (163 aa)
TCM_025838Microfibrillar-associated protein 1. (434 aa)
TCM_025638GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain. (859 aa)
TCM_026027RNA-binding family protein isoform 4. (487 aa)
TCM_026814C2H2 and C2HC zinc fingers superfamily protein, putative. (133 aa)
TCM_026832O-Glycosyl hydrolases family 17 protein, putative isoform 1; Belongs to the glycosyl hydrolase 17 family. (612 aa)
TCM_026841D111/G-patch domain-containing protein. (298 aa)
TCM_031736JHL23J11.4 protein isoform 1. (470 aa)
TCM_032398PHF5-like protein. (110 aa)
TCM_033687Uncharacterized protein. (127 aa)
TCM_034385Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
TCM_031380Aluminum induced protein with YGL and LRDR motifs. (254 aa)
TCM_034612Poly [ADP-ribose] polymerase. (473 aa)
TCM_035719Uncharacterized protein. (225 aa)
TCM_035735Uncharacterized protein. (143 aa)
TCM_034316Ubiquitin-like superfamily protein isoform 1; Belongs to the GST superfamily. (395 aa)
TCM_043024RNA-binding family protein with retrovirus zinc finger-like domain isoform 1. (304 aa)
TCM_043295RNA recognition motif and CCHC-type zinc finger domains containing protein. (257 aa)
TCM_043209Cwf18 isoform 1. (151 aa)
TCM_043260Splicing factor U2af large subunit A isoform 4. (596 aa)
TCM_043293RNA recognition motif and CCHC-type zinc finger domains containing protein. (260 aa)
TCM_044376GC-rich sequence DNA-binding factor-like protein, putative isoform 1. (934 aa)
TCM_044549Cwf21. (158 aa)
TCM_044159Uncharacterized protein isoform 1. (749 aa)
TCM_044552Cwf21. (158 aa)
TCM_045455Crooked neck protein / cell cycle protein, putative. (387 aa)
TCM_013623Uncharacterized protein. (114 aa)
TCM_043735U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
TCM_044534Uncharacterized protein isoform 1. (679 aa)
TCM_015504SER/ARG-rich protein 34A; Belongs to the eukaryotic ribosomal protein P1/P2 family. (424 aa)
TCM_012831Uncharacterized protein. (294 aa)
TCM_015872G10 family protein. (145 aa)
TCM_016407Crooked neck protein / cell cycle protein, putative isoform 1. (701 aa)
TCM_014895Splicing factor-related. (801 aa)
TCM_015090Arginine/serine-rich splicing factor 35. (372 aa)
TCM_027144Squamous cell carcinoma antigen recognized by T-cells 3. (842 aa)
TCM_015383Splicing factor-related. (509 aa)
TCM_029559Carbohydrate-binding X8 domain superfamily protein, putative. (292 aa)
TCM_029561Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative. (1166 aa)
TCM_027427PRP38 family protein isoform 1. (380 aa)
TCM_029904Aluminum induced protein with YGL and LRDR motifs. (255 aa)
TCM_029917Proline-rich spliceosome-associated family protein isoform 1. (606 aa)
TCM_028037GC-rich sequence DNA-binding factor-like protein, putative. (207 aa)
TCM_037328Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1. (490 aa)
TCM_037653CwfJ-like family protein / zinc finger (CCCH-type) family protein isoform 1. (654 aa)
TCM_037829Pre-mRNA splicing Prp18-interacting factor, putative. (209 aa)
TCM_029973Tetratricopeptide repeat-like superfamily protein. (1041 aa)
TCM_038277Zinc finger protein, putative isoform 1. (765 aa)
TCM_037256Cwf21 domain-containing protein. (94 aa)
TCM_040215CCHC-type domain-containing protein. (271 aa)
TCM_040224Uncharacterized protein. (237 aa)
TCM_040897RNA-binding (RRM/RBD/RNP motifs) family protein. (124 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
TCM_041484G10 family protein isoform 1. (145 aa)
TCM_041599PHF5-like protein. (110 aa)
TCM_041684RNA-binding family protein isoform 1. (390 aa)
TCM_038764Uncharacterized protein. (434 aa)
TCM_039496Transducin/WD40 repeat-like superfamily protein. (627 aa)
TCM_045682CwfJ-like family protein, putative. (210 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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