STRINGSTRING
TCM_005726 TCM_005726 TCM_006420 TCM_006420 TCM_006150 TCM_006150 TCM_043050 TCM_043050 TCM_028633 TCM_028633 TCM_028841 TCM_028841 TCM_037921 TCM_037921 TCM_040864 TCM_040864
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_005726Mago nashi family protein. (151 aa)
TCM_006420Partner of Y14-MAGO isoform 1. (232 aa)
TCM_006150Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
TCM_043050Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
TCM_028633CASC3/Barentsz eIF4AIII binding, putative isoform 1. (711 aa)
TCM_028841Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
TCM_037921Uncharacterized protein isoform 1. (715 aa)
TCM_040864RNA-binding family protein. (199 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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