54 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_006385	Oxidoreductase, putative. (455 aa)
	TCM_004326	Uncharacterized protein isoform 1. (287 aa)
	TCM_005467	Nucleotidyltransferase family protein isoform 1. (722 aa)
	TCM_007697	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative. (707 aa)
	TCM_010129	DEAD/DEAH box helicase, putative isoform 1. (1167 aa)
	TCM_007024	RNA-binding protein 47A. (436 aa)
	TCM_018589	Polypyrimidine tract-binding protein 1 isoform 1. (466 aa)
	TCM_020661	P-loop containing nucleoside triphosphate hydrolases superfamily protein. (876 aa)
	TCM_021241	Uncharacterized protein isoform 1. (145 aa)
	TCM_021007	Nuclear transport factor 2 family protein with RNA binding domain isoform 1. (475 aa)
	TCM_021679	ANK_REP_REGION domain-containing protein. (194 aa)
	LOS4	P-loop containing nucleoside triphosphate hydrolases superfamily protein. (502 aa)
	TCM_022624	Small nuclear ribonucleoprotein G. (80 aa)
	TCM_022706	mRNA-decapping enzyme-like protein. (376 aa)
	TCM_025249	Zinc finger (C2H2 type) family protein. (104 aa)
	TCM_026431	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (882 aa)
	TCM_026410	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
	TCM_034020	PERQ amino acid-rich with GYF domain-containing protein 2, putative isoform 1. (1828 aa)
	TCM_015502	CTC-interacting domain 11 isoform 3. (393 aa)
	TCM_035648	Polypyrimidine tract-binding protein 3. (718 aa)
	TCM_042031	Lupus la ribonucleoprotein, putative isoform 3. (893 aa)
	TCM_041605	Zinc finger family protein. (709 aa)
	TCM_040677	RNA-binding family protein isoform 1. (455 aa)
	TCM_030472	Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1420 aa)
	TCM_037594	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (219 aa)
	TCM_037503	Uncharacterized protein. (353 aa)
	TCM_015617	CTC-interacting domain 11 isoform 1. (349 aa)
	TCM_015454	3'-5' exonuclease domain-containing protein. (508 aa)
	TCM_015354	Polypyrimidine tract-binding protein isoform 1. (463 aa)
	TCM_012003	BAH domain,TFIIS helical bundle-like domain isoform 1. (1630 aa)
	TCM_045450	Uncharacterized protein. (313 aa)
	TCM_043598	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1. (578 aa)
	TCM_045448	Uncharacterized protein. (498 aa)
	TCM_045449	Uncharacterized protein. (486 aa)
	TCM_045447	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. (338 aa)
	TCM_043141	Decapping 2 isoform 1. (321 aa)
	TCM_042737	Zinc finger protein, putative. (482 aa)
	TCM_042489	Zinc finger family protein. (792 aa)
	TCM_035065	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	TCM_029168	Uncharacterized protein. (272 aa)
	TCM_029104	CTC-interacting domain 3, putative isoform 2. (643 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_033896	RNA-binding protein 47C isoform 3. (436 aa)
	TCM_030550	Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1390 aa)
	TCM_030903	SM-ATX domain-containing protein. (624 aa)
	TCM_026742	Polynucleotidyl transferase isoform 1. (578 aa)
	TCM_000216	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1. (517 aa)
	TCM_001608	DEAD domain-containing protein. (162 aa)
	TCM_004022	Rho termination factor, putative. (381 aa)
	TCM_003909	Nuclear transport factor 2 family protein with RNA binding domain. (450 aa)
	TCM_000798	Plant U-box 49 isoform 1. (692 aa)
	TCM_005268	NAD(P)-binding Rossmann-fold superfamily protein. (647 aa)
	TCM_005373	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family. (501 aa)
	TCM_004263	Beige/BEACH domain,WD domain, G-beta repeat protein. (3597 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_000798	TCM_022624	A0A061DP35	A0A061EV54	Plant U-box 49 isoform 1.	Small nuclear ribonucleoprotein G.	0.713
TCM_004263	TCM_022706	A0A061DX95	A0A061EVA3	Beige/BEACH domain,WD domain, G-beta repeat protein.	mRNA-decapping enzyme-like protein.	0.661
TCM_004263	TCM_043141	A0A061DX95	A0A061FPQ5	Beige/BEACH domain,WD domain, G-beta repeat protein.	Decapping 2 isoform 1.	0.536
TCM_004326	TCM_021241	A0A061DXK3	A0A061END9	Uncharacterized protein isoform 1.	Uncharacterized protein isoform 1.	0.443
TCM_005373	TCM_010129	A0A061DTF1	A0A061E5K5	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	DEAD/DEAH box helicase, putative isoform 1.	0.463
TCM_005373	TCM_015799	A0A061DTF1	A0A061G3G4	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	Regulator of nonsense transcripts 1.	0.670
TCM_005373	TCM_022624	A0A061DTF1	A0A061EV54	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.409
TCM_005373	TCM_022706	A0A061DTF1	A0A061EVA3	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	mRNA-decapping enzyme-like protein.	0.995
TCM_005373	TCM_029104	A0A061DTF1	A0A061GDJ6	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	CTC-interacting domain 3, putative isoform 2.	0.958
TCM_005373	TCM_030472	A0A061DTF1	A0A061GPJ1	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.909
TCM_005373	TCM_030550	A0A061DTF1	A0A061FBM7	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	Transducin/WD40 repeat-like superfamily protein, putative isoform 1.	0.909
TCM_005373	TCM_034020	A0A061DTF1	A0A061FDH2	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	PERQ amino acid-rich with GYF domain-containing protein 2, putative isoform 1.	0.747
TCM_005373	TCM_043141	A0A061DTF1	A0A061FPQ5	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	Decapping 2 isoform 1.	0.993
TCM_005467	TCM_035065	A0A061E1N6	A0A061FHS8	Nucleotidyltransferase family protein isoform 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.594
TCM_010129	TCM_005373	A0A061E5K5	A0A061DTF1	DEAD/DEAH box helicase, putative isoform 1.	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	0.463
TCM_010129	TCM_015799	A0A061E5K5	A0A061G3G4	DEAD/DEAH box helicase, putative isoform 1.	Regulator of nonsense transcripts 1.	0.514
TCM_010129	TCM_035065	A0A061E5K5	A0A061FHS8	DEAD/DEAH box helicase, putative isoform 1.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.821
TCM_010129	TCM_043141	A0A061E5K5	A0A061FPQ5	DEAD/DEAH box helicase, putative isoform 1.	Decapping 2 isoform 1.	0.483
TCM_015799	TCM_005373	A0A061G3G4	A0A061DTF1	Regulator of nonsense transcripts 1.	RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family.	0.670
TCM_015799	TCM_010129	A0A061G3G4	A0A061E5K5	Regulator of nonsense transcripts 1.	DEAD/DEAH box helicase, putative isoform 1.	0.514