STRINGSTRING
TCM_036809 TCM_036809 TCM_045800 TCM_045800 TCM_041078 TCM_041078 TCM_041395 TCM_041395 TCM_041082 TCM_041082 TCM_029565 TCM_029565 TCM_016040 TCM_016040 TCM_012602 TCM_012602 TCM_012601 TCM_012601 TCM_012236 TCM_012236 TCM_035647 TCM_035647 TCM_043087 TCM_043087 TCM_043092 TCM_043092 TCM_042616 TCM_042616 TCM_035071 TCM_035071 TCM_031007 TCM_031007 TCM_032554 TCM_032554 TCM_032400 TCM_032400 TCM_026465 TCM_026465 TCM_023392 TCM_023392 TCM_025752 TCM_025752 TCM_024725 TCM_024725 TCM_022099 TCM_022099 TCM_021780 TCM_021780 TCM_021231 TCM_021231 TCM_021496 TCM_021496 TCM_021201 TCM_021201 TCM_006917 TCM_006917 TCM_006163 TCM_006163 TCM_007972 TCM_007972 TCM_007751 TCM_007751 TCM_006511 TCM_006511 TCM_005628 TCM_005628 TCM_004458 TCM_004458 TCM_003535 TCM_003535 TCM_003433 TCM_003433 TCM_001431 TCM_001431 TCM_001621 TCM_001621 TCM_001618 TCM_001618
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_036809Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1. (778 aa)
TCM_045800Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (1068 aa)
TCM_041078Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (449 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
TCM_041082Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (449 aa)
TCM_02956516S rRNA processing protein RimM family, putative isoform 1. (665 aa)
TCM_016040Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (783 aa)
TCM_012602Translation elongation factor EF1A/initiation factor IF2gamma family protein. (332 aa)
TCM_012601Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1. (589 aa)
TCM_012236Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (484 aa)
TCM_035647Ribosomal protein 1; Belongs to the universal ribosomal protein uL3 family. (389 aa)
TCM_043087Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (449 aa)
TCM_043092Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (449 aa)
TCM_042616Ribosomal protein L35Ae family protein isoform 1. (112 aa)
TCM_035071Eukaryotic translation initiation factor 2 subunit 3, putative. (190 aa)
TCM_031007Translation elongation factor EF1A/initiation factor IF2gamma family protein. (258 aa)
TCM_032554Translation initiation factor 2, small GTP-binding protein isoform 1. (1016 aa)
TCM_032400Ribosomal protein S5/Elongation factor G/III/V family protein. (843 aa)
TCM_026465H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (193 aa)
TCM_023392Translation initiation factor 2, small GTP-binding protein. (265 aa)
TCM_025752Ribosomal protein L3 family protein isoform 1; Belongs to the universal ribosomal protein uL3 family. (286 aa)
TCM_024725Elongation factor family protein isoform 1. (812 aa)
TCM_022099GTP binding Elongation factor Tu family protein. (566 aa)
TCM_021780Ribosomal protein L35Ae family protein isoform 1. (112 aa)
TCM_021231Eukaryotic translation initiation factor 2 gamma subunit, GAMMA isoform 2. (489 aa)
TCM_021496Ribosomal protein L3 plastid isoform 2; Belongs to the universal ribosomal protein uL3 family. (338 aa)
TCM_021201Alanine--tRNA ligase. (257 aa)
TCM_006917Translation initiation factor IF-2 isoform 1. (730 aa)
TCM_006163R-protein L3 B isoform 1; Belongs to the universal ribosomal protein uL3 family. (389 aa)
TCM_007972Nuclear assembly factor 1, putative isoform 1. (678 aa)
TCM_007751Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (1015 aa)
TCM_006511Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (999 aa)
TCM_005628Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (755 aa)
TCM_004458Elongation factor Tu. (543 aa)
TCM_003535Elongation factor family protein isoform 1. (665 aa)
TCM_003433Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. (704 aa)
TCM_001431Ribosomal protein S5/Elongation factor G/III/V family protein. (1027 aa)
TCM_001621Eukaryotic translation initiation factor 2 family protein isoform 1. (1431 aa)
TCM_001618Eukaryotic translation initiation factor 2 family protein isoform 3. (1390 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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