STRINGSTRING
TCM_042757 TCM_042757 TCM_040959 TCM_040959 TCM_040726 TCM_040726 TCM_042083 TCM_042083 TCM_041395 TCM_041395 TCM_040724 TCM_040724 TCM_040771 TCM_040771 TCM_046931 TCM_046931 TCM_039576 TCM_039576 TOP6B TOP6B TCM_037188 TCM_037188 TCM_036774 TCM_036774 TCM_029839 TCM_029839 TCM_028919 TCM_028919 TCM_016330 TCM_016330 TCM_015252 TCM_015252 TCM_016612 TCM_016612 TCM_016040 TCM_016040 TCM_015805 TCM_015805 TCM_043879 TCM_043879 TCM_044481 TCM_044481 TCM_043261 TCM_043261 MLH1 MLH1 TCM_033971 TCM_033971 TCM_034246 TCM_034246 TCM_034239 TCM_034239 TCM_026762 TCM_026762 TCM_032400 TCM_032400 TCM_025634 TCM_025634 TCM_024968 TCM_024968 TCM_030579 TCM_030579 TCM_026574 TCM_026574 TCM_025836 TCM_025836 TCM_025463 TCM_025463 TCM_024636 TCM_024636 TCM_024112 TCM_024112 TCM_020568 TCM_020568 TCM_021405 TCM_021405 TCM_020623 TCM_020623 TCM_020303 TCM_020303 TCM_016989 TCM_016989 TCM_016930 TCM_016930 TCM_011421 TCM_011421 TCM_011053 TCM_011053 TCM_007977 TCM_007977 TCM_007575 TCM_007575 TCM_005208 TCM_005208 TCM_007091 TCM_007091 TCM_005628 TCM_005628 TCM_005105 TCM_005105 TCM_004628 TCM_004628 TCM_002328 TCM_002328 TCM_001431 TCM_001431 TCM_000998 TCM_000998 TCM_000060 TCM_000060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_042757DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1473 aa)
TCM_0409594-(Cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. (381 aa)
TCM_040726Ribosomal protein S5 family protein; Belongs to the universal ribosomal protein uS5 family. (269 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
TCM_040724Ribosomal protein S5 family protein isoform 1; Belongs to the universal ribosomal protein uS5 family. (268 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_046931Myosin-related isoform 1; Belongs to the universal ribosomal protein uS5 family. (961 aa)
TCM_039576Galacturonic acid kinase isoform 1. (447 aa)
TOP6BDNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (669 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_036774Arabinose kinase isoform 1. (993 aa)
TCM_029839Ribosomal protein S5 family protein; Belongs to the universal ribosomal protein uS5 family. (303 aa)
TCM_028919DNA repair protein RadA/Sms. (635 aa)
TCM_016330Heat shock protein 90.1. (705 aa)
TCM_015252Heat shock protein 90.1 isoform 1. (703 aa)
TCM_016612GHMP kinase family protein. (507 aa)
TCM_016040Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (783 aa)
TCM_015805Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (888 aa)
TCM_043879Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (418 aa)
TCM_044481Ribosomal protein S5 domain 2-like superfamily protein. (149 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
MLH1MUTL isoform 1. (729 aa)
TCM_033971Ribosomal protein S9 isoform 1; Belongs to the universal ribosomal protein uS9 family. (283 aa)
TCM_034246Chaperone protein htpG family protein isoform 1. (840 aa)
TCM_034239Chaperone protein htpG family protein, putative. (625 aa)
TCM_026762Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1003 aa)
TCM_032400Ribosomal protein S5/Elongation factor G/III/V family protein. (843 aa)
TCM_025634Ribosomal protein S5 family protein; Belongs to the universal ribosomal protein uS5 family. (506 aa)
TCM_024968Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family. (377 aa)
TCM_030579Heat shock protein 81.4. (699 aa)
TCM_026574Mevalonate kinase. (385 aa)
TCM_025836Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_024112DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (726 aa)
TCM_020568Ribosomal protein S5 domain 2-like superfamily protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
TCM_021405Mevalonate/galactokinase family protein isoform 2. (499 aa)
TCM_020623Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (272 aa)
TCM_020303Uncharacterized protein. (94 aa)
TCM_016989Glucuronokinase G. (383 aa)
TCM_016930Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
TCM_011421Chaperone protein htpG family protein isoform 1. (789 aa)
TCM_011053UDP-3-O-acyl N-acetylglycosamine deacetylase family protein. (315 aa)
TCM_007977Mevalonate/galactokinase family protein, putative. (349 aa)
TCM_007575Homoserine kinase. (363 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_007091Ribosomal protein S5 domain 2-like superfamily protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)
TCM_005628Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (755 aa)
TCM_005105L-fucokinase/GDP-L-fucose pyrophosphorylase. (1118 aa)
TCM_004628DNA mismatch repair protein pms2, putative isoform 1. (1017 aa)
TCM_002328Heat shock protein 89.1 isoform 1. (814 aa)
TCM_001431Ribosomal protein S5/Elongation factor G/III/V family protein. (1027 aa)
TCM_000998Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (245 aa)
TCM_000060MUTL protein, putative isoform 1. (1218 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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