15 items (Theobroma cacao) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_021436	30S ribosomal protein S1, chloroplastic. (443 aa)
	TCM_025027	RNA binding,RNA binding isoform 1. (1824 aa)
	TCM_034192	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1. (1185 aa)
	TCM_035807	Nucleic acid-binding proteins superfamily isoform 2. (521 aa)
	TCM_044683	Global transcription factor group, putative isoform 1. (302 aa)
	TCM_044643	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1617 aa)
	TCM_016157	Eukaryotic translation initiation factor 2 subunit 1. (340 aa)
	TCM_041752	DNA-directed RNA polymerase II isoform 1. (176 aa)
	EFTS-2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (1064 aa)
	TCM_014586	Nucleic acid-binding, OB-fold-like protein isoform 1. (677 aa)
	TCM_016217	Nucleic acid-binding, OB-fold-like protein, putative isoform 1. (747 aa)
	TCM_025836	Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
	TCM_016930	Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
	TCM_020171	Nucleic acid-binding proteins superfamily isoform 1. (393 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTS-2	TCM_016930	A0A061GLJ7	A0A061ECS9	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative isoform 1.	0.533
EFTS-2	TCM_020171	A0A061GLJ7	A0A061EJM2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Nucleic acid-binding proteins superfamily isoform 1.	0.835
EFTS-2	TCM_021436	A0A061GLJ7	A0A061EPQ4	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	30S ribosomal protein S1, chloroplastic.	0.835
EFTS-2	TCM_025027	A0A061GLJ7	A0A061F521	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	RNA binding,RNA binding isoform 1.	0.835
EFTS-2	TCM_025836	A0A061GLJ7	A0A061F1B1	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase isoform 1.	0.574
EFTS-2	TCM_035807	A0A061GLJ7	A0A061FIY7	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Nucleic acid-binding proteins superfamily isoform 2.	0.835
TCM_001299	TCM_020171	A0A061DIE4	A0A061EJM2	Ribosomal RNA processing 4.	Nucleic acid-binding proteins superfamily isoform 1.	0.782
TCM_001299	TCM_021436	A0A061DIE4	A0A061EPQ4	Ribosomal RNA processing 4.	30S ribosomal protein S1, chloroplastic.	0.782
TCM_001299	TCM_025027	A0A061DIE4	A0A061F521	Ribosomal RNA processing 4.	RNA binding,RNA binding isoform 1.	0.945
TCM_001299	TCM_034192	A0A061DIE4	A0A061FE18	Ribosomal RNA processing 4.	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1.	0.438
TCM_001299	TCM_035807	A0A061DIE4	A0A061FIY7	Ribosomal RNA processing 4.	Nucleic acid-binding proteins superfamily isoform 2.	0.782
TCM_016930	EFTS-2	A0A061ECS9	A0A061GLJ7	Polyribonucleotide nucleotidyltransferase, putative isoform 1.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.533
TCM_016930	TCM_025836	A0A061ECS9	A0A061F1B1	Polyribonucleotide nucleotidyltransferase, putative isoform 1.	Polyribonucleotide nucleotidyltransferase isoform 1.	0.911
TCM_020171	EFTS-2	A0A061EJM2	A0A061GLJ7	Nucleic acid-binding proteins superfamily isoform 1.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.835
TCM_020171	TCM_001299	A0A061EJM2	A0A061DIE4	Nucleic acid-binding proteins superfamily isoform 1.	Ribosomal RNA processing 4.	0.782
TCM_020171	TCM_034192	A0A061EJM2	A0A061FE18	Nucleic acid-binding proteins superfamily isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1.	0.452
TCM_021436	EFTS-2	A0A061EPQ4	A0A061GLJ7	30S ribosomal protein S1, chloroplastic.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.835
TCM_021436	TCM_001299	A0A061EPQ4	A0A061DIE4	30S ribosomal protein S1, chloroplastic.	Ribosomal RNA processing 4.	0.782
TCM_021436	TCM_034192	A0A061EPQ4	A0A061FE18	30S ribosomal protein S1, chloroplastic.	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1.	0.452
TCM_021436	TCM_035807	A0A061EPQ4	A0A061FIY7	30S ribosomal protein S1, chloroplastic.	Nucleic acid-binding proteins superfamily isoform 2.	0.917