STRINGSTRING
TCM_001299 TCM_001299 TCM_021436 TCM_021436 TCM_025027 TCM_025027 TCM_034192 TCM_034192 TCM_035807 TCM_035807 TCM_044683 TCM_044683 TCM_044643 TCM_044643 TCM_016157 TCM_016157 TCM_041752 TCM_041752 EFTS-2 EFTS-2 TCM_014586 TCM_014586 TCM_016217 TCM_016217 TCM_025836 TCM_025836 TCM_016930 TCM_016930 TCM_020171 TCM_020171
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_02143630S ribosomal protein S1, chloroplastic. (443 aa)
TCM_025027RNA binding,RNA binding isoform 1. (1824 aa)
TCM_034192Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1. (1185 aa)
TCM_035807Nucleic acid-binding proteins superfamily isoform 2. (521 aa)
TCM_044683Global transcription factor group, putative isoform 1. (302 aa)
TCM_044643Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1617 aa)
TCM_016157Eukaryotic translation initiation factor 2 subunit 1. (340 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
EFTS-2Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (1064 aa)
TCM_014586Nucleic acid-binding, OB-fold-like protein isoform 1. (677 aa)
TCM_016217Nucleic acid-binding, OB-fold-like protein, putative isoform 1. (747 aa)
TCM_025836Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
TCM_016930Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
TCM_020171Nucleic acid-binding proteins superfamily isoform 1. (393 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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