STRINGSTRING
TCM_004624 TCM_004624 TCM_000216 TCM_000216 TCM_019764 TCM_019764 TCM_029204 TCM_029204 TCM_030450 TCM_030450 TCM_023927 TCM_023927 TCM_016717 TCM_016717 TCM_011235 TCM_011235 TCM_008817 TCM_008817 TCM_006385 TCM_006385 TCM_004463 TCM_004463
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_0046242-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein. (253 aa)
TCM_0002162-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1. (517 aa)
TCM_0197642-oxoglutarate-dependent dioxygenase family protein isoform 1. (433 aa)
TCM_0292042-oxoglutarate-dependent dioxygenase family protein, putative isoform 1. (461 aa)
TCM_030450Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 1. (241 aa)
TCM_023927Oxidoreductases isoform 1. (333 aa)
TCM_016717RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1. (338 aa)
TCM_011235Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (681 aa)
TCM_008817Oxidoreductase, 2OG-Fe(II) oxygenase family protein. (361 aa)
TCM_006385Oxidoreductase, putative. (455 aa)
TCM_004463Transport protein sec31 isoform 1. (610 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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