STRINGSTRING
TCM_026456 TCM_026456 TCM_020436 TCM_020436 TCM_041482 TCM_041482 TCM_005636 TCM_005636 TCM_007621 TCM_007621 TCM_017190 TCM_017190 TCM_041451 TCM_041451 TCM_040245 TCM_040245 TCM_012179 TCM_012179
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_026456PHD finger protein ING. (263 aa)
TCM_020436PHD finger protein ING. (247 aa)
TCM_041482Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (456 aa)
TCM_005636E3 ubiquitin protein ligase. (878 aa)
TCM_007621Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (499 aa)
TCM_017190Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (111 aa)
TCM_041451Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1028 aa)
TCM_040245E3 ubiquitin protein ligase. (877 aa)
TCM_012179Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (470 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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