STRINGSTRING
TCM_037623 TCM_037623 TCM_042062 TCM_042062 TCM_042001 TCM_042001 TCM_041933 TCM_041933 TCM_041685 TCM_041685 TCM_042083 TCM_042083 TCM_041300 TCM_041300 TCM_041365 TCM_041365 TCM_041372 TCM_041372 TCM_040771 TCM_040771 TCM_040506 TCM_040506 TCM_037083 TCM_037083 TCM_030472 TCM_030472 TCM_038150 TCM_038150 TCM_037647 TCM_037647 LSM1-2 LSM1-2 TCM_037319 TCM_037319 TCM_037320 TCM_037320 TCM_037207 TCM_037207 TCM_037188 TCM_037188 TCM_028866 TCM_028866 TCM_036809 TCM_036809 TCM_027417 TCM_027417 TCM_029076 TCM_029076 LSM1 LSM1 TCM_027418 TCM_027418 TCM_027415 TCM_027415 TCM_026907 TCM_026907 TCM_016200 TCM_016200 TCM_015661 TCM_015661 TCM_012352 TCM_012352 TCM_012055 TCM_012055 TCM_011957 TCM_011957 TCM_014910 TCM_014910 TCM_012025 TCM_012025 LSM3 LSM3 TCM_043331 TCM_043331 TCM_043141 TCM_043141 TCM_000043 TCM_000043 TCM_001299 TCM_001299 TCM_001625 TCM_001625 TCM_001652 TCM_001652 TCM_002114 TCM_002114 TCM_002115 TCM_002115 TCM_002348 TCM_002348 LSM5 LSM5 TCM_002662 TCM_002662 TCM_002655 TCM_002655 LSM4 LSM4 TCM_005373 TCM_005373 TCM_005611 TCM_005611 TCM_005909 TCM_005909 TCM_005208 TCM_005208 TCM_007507 TCM_007507 TCM_005467 TCM_005467 TCM_010129 TCM_010129 TCM_006895 TCM_006895 TCM_016808 TCM_016808 TCM_016985 TCM_016985 TCM_017922 TCM_017922 TCM_019399 TCM_019399 TCM_019826 TCM_019826 TCM_020019 TCM_020019 TCM_020786 TCM_020786 TCM_020550 TCM_020550 TCM_022079 TCM_022079 TCM_021924 TCM_021924 TCM_022706 TCM_022706 TCM_024636 TCM_024636 TCM_025463 TCM_025463 TCM_026126 TCM_026126 TCM_022844 TCM_022844 TCM_026449 TCM_026449 TCM_030630 TCM_030630 TCM_026258 TCM_026258 TCM_032443 TCM_032443 TCM_030550 TCM_030550 TCM_035065 TCM_035065 TCM_042737 TCM_042737 TCM_034795 TCM_034795 TCM_043261 TCM_043261
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_037623Eukaryotic translation initiation factor 4A1 isoform 1; Belongs to the DEAD box helicase family. (413 aa)
TCM_042062Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1. (844 aa)
TCM_042001RNA binding family protein, putative isoform 1. (1045 aa)
TCM_041933NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
TCM_041685RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (1441 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_041300Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
TCM_041365Uncharacterized protein. (208 aa)
TCM_041372F-box and associated interaction domains-containing protein. (109 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_040506Cell differentiation, Rcd1-like protein isoform 4. (322 aa)
TCM_037083Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
TCM_030472Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1420 aa)
TCM_038150Tetratricopeptide repeat-like superfamily protein. (851 aa)
TCM_037647CRS1 / YhbY domain-containing protein, putative isoform 1. (873 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_037319Eukaryotic translation initiation factor 4A1; Belongs to the DEAD box helicase family. (412 aa)
TCM_037320Eukaryotic translation initiation factor 4A1; Belongs to the DEAD box helicase family. (413 aa)
TCM_037207Class III HD-Zip protein 8 isoform 1. (880 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_028866Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1. (838 aa)
TCM_036809Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1. (778 aa)
TCM_027417CCR4-associated factor 1. (356 aa)
TCM_029076Eukaryotic translation initiation factor 4A1 isoform 1; Belongs to the DEAD box helicase family. (413 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_027418Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027415Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_026907Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 5. (848 aa)
TCM_016200P-loop containing nucleoside triphosphate hydrolases superfamily protein. (560 aa)
TCM_015661F-box domain-containing protein. (422 aa)
TCM_012352CRS1 / YhbY domain-containing protein. (919 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_011957RING/U-box superfamily protein, putative isoform 1. (346 aa)
TCM_014910Ccr4-not transcription complex, putative. (2253 aa)
TCM_012025Ribonuclease III family protein, putative. (189 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_043331Polynucleotidyl transferase, putative. (252 aa)
TCM_043141Decapping 2 isoform 1. (321 aa)
TCM_000043Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family. (938 aa)
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_001625U6 snRNA-specific terminal uridylyltransferase 1, putative. (579 aa)
TCM_001652Uncharacterized protein isoform 1. (443 aa)
TCM_002114Cell differentiation, Rcd1-like protein, putative. (324 aa)
TCM_002115Uncharacterized protein isoform 1. (864 aa)
TCM_002348Uncharacterized protein. (108 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_002662Poly(A)-specific ribonuclease PARN-like, putative isoform 2. (623 aa)
TCM_002655RNA-binding CRS1 / YhbY domain protein. (657 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
TCM_005373RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family. (501 aa)
TCM_005611Ccr4-not transcription complex, putative isoform 1. (2413 aa)
TCM_005909Small nuclear ribonucleoprotein family protein. (99 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_007507RNA-binding CRS1 / YhbY domain protein isoform 1. (351 aa)
TCM_005467Nucleotidyltransferase family protein isoform 1. (722 aa)
TCM_010129DEAD/DEAH box helicase, putative isoform 1. (1167 aa)
TCM_006895Polynucleotidyl transferase, putative. (205 aa)
TCM_016808CRM family member 2, putative isoform 1. (1087 aa)
TCM_016985RNA-binding CRS1 / YhbY domain protein. (593 aa)
TCM_017922Uncharacterized protein. (269 aa)
TCM_019399Chloroplast splicing factor CRS1, putative isoform 1. (818 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_020019RNA-binding CRS1 / YhbY domain protein. (450 aa)
TCM_020786CRM family member 3A isoform 1. (876 aa)
TCM_020550P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (477 aa)
TCM_022079RNA binding family protein, putative isoform 1. (1086 aa)
TCM_021924Ribonuclease II, putative isoform 1. (795 aa)
TCM_022706mRNA-decapping enzyme-like protein. (376 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_026126Nucleic acid-binding isoform 3. (221 aa)
TCM_022844Polynucleotidyl transferase. (285 aa)
TCM_026449Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
TCM_030630Poly(A)-specific ribonuclease PARN isoform 1. (726 aa)
TCM_026258F-box associated ubiquitination effector family protein, putative. (410 aa)
TCM_032443Nucleic acid-binding, OB-fold-like protein. (104 aa)
TCM_030550Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1390 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_042737Zinc finger protein, putative. (482 aa)
TCM_034795Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (1194 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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