15 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_032443	Nucleic acid-binding, OB-fold-like protein. (104 aa)
	TCM_026126	Nucleic acid-binding isoform 3. (221 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_011445	D-aminoacyl-tRNA deacylases isoform 1. (333 aa)
	TCM_005208	3'-5'-exoribonuclease family protein isoform 1. (316 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_043141	Decapping 2 isoform 1. (321 aa)
	TCM_014367	D-aminoacyl-tRNA deacylases, putative. (323 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_037188	Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_042083	3'-5'-exoribonuclease family protein isoform 1. (256 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_001299	TCM_002348	A0A061DIE4	A0A061DL98	Ribosomal RNA processing 4.	Uncharacterized protein.	0.989
TCM_001299	TCM_005208	A0A061DIE4	A0A061E0L1	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.998
TCM_001299	TCM_011445	A0A061DIE4	A0A061E9B1	Ribosomal RNA processing 4.	D-aminoacyl-tRNA deacylases isoform 1.	0.704
TCM_001299	TCM_012055	A0A061DIE4	A0A061G112	Ribosomal RNA processing 4.	PNAS-3 related isoform 1.	0.999
TCM_001299	TCM_014367	A0A061DIE4	A0A061FY34	Ribosomal RNA processing 4.	D-aminoacyl-tRNA deacylases, putative.	0.704
TCM_001299	TCM_024636	A0A061DIE4	A0A061EX61	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein.	0.999
TCM_001299	TCM_025463	A0A061DIE4	A0A061EZ56	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.993
TCM_001299	TCM_026126	A0A061DIE4	A0A061F0F8	Ribosomal RNA processing 4.	Nucleic acid-binding isoform 3.	0.993
TCM_001299	TCM_032443	A0A061DIE4	A0A061FAR4	Ribosomal RNA processing 4.	Nucleic acid-binding, OB-fold-like protein.	0.993
TCM_001299	TCM_037188	A0A061DIE4	A0A061GJP9	Ribosomal RNA processing 4.	Ribosomal protein S5 domain 2-like superfamily protein isoform 1.	0.999
TCM_001299	TCM_040771	A0A061DIE4	A0A061GTD2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein, putative isoform 1.	0.993
TCM_001299	TCM_042083	A0A061DIE4	A0A061GX12	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.997
TCM_001299	TCM_043141	A0A061DIE4	A0A061FPQ5	Ribosomal RNA processing 4.	Decapping 2 isoform 1.	0.907
TCM_001299	TCM_043261	A0A061DIE4	A0A061FPF2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 7.	0.995
TCM_002348	TCM_001299	A0A061DL98	A0A061DIE4	Uncharacterized protein.	Ribosomal RNA processing 4.	0.989
TCM_002348	TCM_005208	A0A061DL98	A0A061E0L1	Uncharacterized protein.	3'-5'-exoribonuclease family protein isoform 1.	0.979
TCM_002348	TCM_011445	A0A061DL98	A0A061E9B1	Uncharacterized protein.	D-aminoacyl-tRNA deacylases isoform 1.	0.665
TCM_002348	TCM_012055	A0A061DL98	A0A061G112	Uncharacterized protein.	PNAS-3 related isoform 1.	0.987
TCM_002348	TCM_014367	A0A061DL98	A0A061FY34	Uncharacterized protein.	D-aminoacyl-tRNA deacylases, putative.	0.665
TCM_002348	TCM_024636	A0A061DL98	A0A061EX61	Uncharacterized protein.	3'-5'-exoribonuclease family protein.	0.985