STRINGSTRING
TCM_025615 TCM_025615 TCM_000157 TCM_000157 TCM_000185 TCM_000185 TCM_000647 TCM_000647 TCM_000690 TCM_000690 TCM_000787 TCM_000787 TCM_000815 TCM_000815 TCM_001004 TCM_001004 TCM_001045 TCM_001045 TCM_002002 TCM_002002 TCM_002839 TCM_002839 TCM_003122 TCM_003122 TCM_003529 TCM_003529 TCM_002873 TCM_002873 TCM_003998 TCM_003998 TCM_003976 TCM_003976 MCM7 MCM7 TCM_001497 TCM_001497 TCM_005009 TCM_005009 TCM_001683 TCM_001683 TCM_004904 TCM_004904 TCM_005278 TCM_005278 TCM_005313 TCM_005313 TCM_005319 TCM_005319 TCM_005989 TCM_005989 TCM_005965 TCM_005965 TCM_004085 TCM_004085 TCM_004315 TCM_004315 TCM_006613 TCM_006613 TCM_006649 TCM_006649 TCM_006817 TCM_006817 TCM_007118 TCM_007118 TCM_006631 TCM_006631 TCM_007246 TCM_007246 TCM_007425 TCM_007425 TCM_005507 TCM_005507 TCM_007869 TCM_007869 TCM_010105 TCM_010105 TCM_010223 TCM_010223 TCM_008656 TCM_008656 TCM_010413 TCM_010413 TCM_010761 TCM_010761 TCM_011838 TCM_011838 TCM_011635 TCM_011635 TCM_011759 TCM_011759 TCM_017013 TCM_017013 TCM_019032 TCM_019032 TCM_019367 TCM_019367 TCM_019937 TCM_019937 TCM_046761 TCM_046761 TCM_020662 TCM_020662 TCM_046762 TCM_046762 TCM_020907 TCM_020907 TCM_020677 TCM_020677 TCM_021159 TCM_021159 TCM_021168 TCM_021168 TCM_019938 TCM_019938 TCM_021739 TCM_021739 TCM_021825 TCM_021825 TCM_021894 TCM_021894 TCM_021969 TCM_021969 TCM_022086 TCM_022086 TCM_022853 TCM_022853 TCM_024253 TCM_024253 TCM_024818 TCM_024818 TCM_025121 TCM_025121 TCM_021880 TCM_021880 TCM_025007 TCM_025007 TCM_025265 TCM_025265 TCM_021956 TCM_021956 TCM_022058 TCM_022058 TCM_025692 TCM_025692 TCM_022240 TCM_022240 TCM_026181 TCM_026181 TCM_026012 TCM_026012 TCM_026625 TCM_026625 TCM_026389 TCM_026389 TCM_026771 TCM_026771 TCM_026624 TCM_026624 TCM_030581 TCM_030581 TCM_025562 TCM_025562 TCM_046872 TCM_046872 TCM_026659 TCM_026659 TCM_033764 TCM_033764 TCM_033435 TCM_033435 TCM_034074 TCM_034074 TCM_046881 TCM_046881 TCM_046883 TCM_046883 TCM_034479 TCM_034479 TCM_046885 TCM_046885 TCM_034229 TCM_034229 TCM_034713 TCM_034713 TCM_035163 TCM_035163 TCM_036423 TCM_036423 TCM_042594 TCM_042594 TCM_042729 TCM_042729 TCM_043118 TCM_043118 TCM_043262 TCM_043262 TCM_045209 TCM_045209 TCM_044172 TCM_044172 TCM_045196 TCM_045196 TCM_045202 TCM_045202 TCM_012319 TCM_012319 TCM_013360 TCM_013360 TCM_013992 TCM_013992 TCM_044169 TCM_044169 TCM_014274 TCM_014274 TCM_044781 TCM_044781 TCM_015256 TCM_015256 TCM_014925 TCM_014925 TCM_015202 TCM_015202 TCM_015584 TCM_015584 TCM_015875 TCM_015875 TCM_016675 TCM_016675 TCM_016615 TCM_016615 TCM_027051 TCM_027051 TCM_028353 TCM_028353 TCM_015535 TCM_015535 TCM_028771 TCM_028771 TCM_029015 TCM_029015 TCM_029263 TCM_029263 TCM_029264 TCM_029264 TCM_016451 TCM_016451 TCM_029247 TCM_029247 TCM_029279 TCM_029279 TCM_029512 TCM_029512 TCM_029517 TCM_029517 TCM_030206 TCM_030206 TCM_030019 TCM_030019 TCM_046899 TCM_046899 TCM_036772 TCM_036772 TCM_046917 TCM_046917 TCM_047088 TCM_047088 TCM_037162 TCM_037162 TCM_029276 TCM_029276 TCM_037055 TCM_037055 TCM_029362 TCM_029362 TCM_029400 TCM_029400 TCM_046918 TCM_046918 TCM_037566 TCM_037566 TCM_037986 TCM_037986 TCM_037819 TCM_037819 TCM_037852 TCM_037852 TCM_038379 TCM_038379 TCM_040192 TCM_040192 TCM_040678 TCM_040678 TCM_037509 TCM_037509 TCM_037567 TCM_037567 TCM_041008 TCM_041008 TCM_041032 TCM_041032 TCM_041398 TCM_041398 TCM_041332 TCM_041332 TCM_041469 TCM_041469 TCM_041648 TCM_041648 TCM_040784 TCM_040784 TCM_045760 TCM_045760
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_025615Uncharacterized protein. (269 aa)
TCM_000157S phase kinase-associated protein 1; Belongs to the SKP1 family. (156 aa)
TCM_00018526S proteasome non-ATPase regulatory subunit 4 isoform 1. (408 aa)
TCM_000647DNA polymerase. (1537 aa)
TCM_000690Cyclin d3,3 isoform 1; Belongs to the cyclin family. (452 aa)
TCM_000787D5-type cyclin, putative; Belongs to the cyclin family. (349 aa)
TCM_000815Cyclin d1,1, putative isoform 2; Belongs to the cyclin family. (302 aa)
TCM_001004Cyclin d4,2, putative; Belongs to the cyclin family. (369 aa)
TCM_001045Cak assembly factor, putative. (191 aa)
TCM_002002Uncharacterized protein. (70 aa)
TCM_002839Nam protein 1, putative. (419 aa)
TCM_003122Regulatory particle AAA-ATPase 2A; Belongs to the AAA ATPase family. (446 aa)
TCM_003529DNA helicase; Belongs to the MCM family. (940 aa)
TCM_002873Cell division cycle 45. (599 aa)
TCM_003998NAC domain protein, IPR003441. (271 aa)
TCM_003976Calcium-binding EF-hand family protein. (545 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (718 aa)
TCM_001497Regulatory particle AAA-ATPase 2A isoform 1; Belongs to the AAA ATPase family. (446 aa)
TCM_005009Nam protein 1, putative. (462 aa)
TCM_001683Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
TCM_004904Ribosomal protein S27a / Ubiquitin family protein. (172 aa)
TCM_005278Uncharacterized protein isoform 1. (399 aa)
TCM_005313Origin recognition complex protein 5. (533 aa)
TCM_005319SKP1-like protein 21 isoform 1; Belongs to the SKP1 family. (371 aa)
TCM_005989Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
TCM_005965DNA helicase; Belongs to the MCM family. (827 aa)
TCM_004085CDT1 A, putative. (616 aa)
TCM_00431520S proteasome beta subunit D1. (154 aa)
TCM_006613S phase kinase-associated protein 1; Belongs to the SKP1 family. (156 aa)
TCM_00664926S proteasome non-ATPase regulatory subunit 4. (399 aa)
TCM_006817DNA helicase; Belongs to the MCM family. (839 aa)
TCM_007118Cyclin-D3-1; Belongs to the cyclin family. (393 aa)
TCM_006631Minichromosome maintenance 10 isoform 1. (397 aa)
TCM_007246Cyclin d1,1 isoform 1; Belongs to the cyclin family. (402 aa)
TCM_007425Minichromosome maintenance 9 isoform 1; Belongs to the MCM family. (791 aa)
TCM_005507Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (223 aa)
TCM_007869D6-type cyclin; Belongs to the cyclin family. (288 aa)
TCM_010105Serine/threonine-protein phosphatase. (306 aa)
TCM_010223Cyclin-D1-1 isoform 1; Belongs to the cyclin family. (355 aa)
TCM_008656DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (454 aa)
TCM_010413Ribosomal protein S27a / Ubiquitin family protein. (156 aa)
TCM_010761DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (621 aa)
TCM_011838Phosphatase 2A subunit A2, 65,PP2AA2. (587 aa)
TCM_01163526S proteasome non-ATPase regulatory subunit 11. (422 aa)
TCM_011759Origin recognition complex protein 6 isoform 1. (287 aa)
TCM_017013Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (273 aa)
TCM_019032REPA_OB_2 domain-containing protein. (162 aa)
TCM_019367HEAT repeat-containing protein. (1183 aa)
TCM_019937Nam protein 1, putative. (435 aa)
TCM_04676126S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1009 aa)
TCM_020662Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (204 aa)
TCM_04676226S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1009 aa)
TCM_020907Calcium-binding EF-hand family protein isoform 1. (536 aa)
TCM_020677Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1. (781 aa)
TCM_021159Tonneau 2 (TON2), 2 isoform 1. (477 aa)
TCM_021168Always early, putative isoform 2. (1186 aa)
TCM_019938Nam protein 1, putative. (400 aa)
TCM_021739RP non-ATPase subunit 8A. (310 aa)
TCM_021825Proteasome inhibitor-related. (481 aa)
TCM_021894D7-type cyclin, putative; Belongs to the cyclin family. (375 aa)
TCM_021969Origin recognition complex second largest subunit 2. (361 aa)
TCM_022086Minichromosome maintenance 8; Belongs to the MCM family. (855 aa)
TCM_022853E2F transcription factor 3 isoform 1. (480 aa)
TCM_024253Origin of replication complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (421 aa)
TCM_024818Chaperone DnaJ-domain superfamily protein isoform 1. (347 aa)
TCM_025121SKP1-like 11, putative. (119 aa)
TCM_021880Ribulose bisphosphate carboxylase/oxygenase activase 1 isoform 1. (560 aa)
TCM_025007Serine/threonine-protein phosphatase. (313 aa)
TCM_025265N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein, putative. (216 aa)
TCM_021956Transcription factor DP isoform 1; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (290 aa)
TCM_022058TerC integral membrane domain-containing protein isoform 1. (459 aa)
TCM_025692Skp1 domain-containing protein. (208 aa)
TCM_022240Transcription factor DP. (285 aa)
TCM_026181Calcium-binding EF-hand family protein isoform 1. (539 aa)
TCM_026012Uncharacterized protein. (355 aa)
TCM_026625Cyclin-H1-1 isoform 1; Belongs to the cyclin family. (426 aa)
TCM_026389Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1. (705 aa)
TCM_026771Proteasome subunit beta; Belongs to the peptidase T1B family. (245 aa)
TCM_026624DIRP,Myb-like DNA-binding domain, putative isoform 2. (1169 aa)
TCM_030581WW domain-containing protein, putative isoform 1. (922 aa)
TCM_025562Origin recognition complex subunit 3, putative isoform 1. (731 aa)
TCM_046872ARM repeat superfamily protein. (524 aa)
TCM_026659Regulatory particle triple-A ATPase 5A; Belongs to the AAA ATPase family. (423 aa)
TCM_033764D3-type cyclin isoform 1; Belongs to the cyclin family. (364 aa)
TCM_033435SKP1-like protein 1A, putative; Belongs to the SKP1 family. (170 aa)
TCM_034074Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (301 aa)
TCM_046881AAA-type ATPase family protein; Belongs to the AAA ATPase family. (398 aa)
TCM_046883Winged-helix DNA-binding transcription factor family protein, putative. (208 aa)
TCM_034479D2/4-type cyclin; Belongs to the cyclin family. (356 aa)
TCM_046885Winged-helix DNA-binding transcription factor family protein, putative. (425 aa)
TCM_034229Uncharacterized protein isoform 2. (269 aa)
TCM_034713D5-type cyclin, putative; Belongs to the cyclin family. (317 aa)
TCM_035163Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (204 aa)
TCM_036423SKP1-like protein 1A, putative; Belongs to the SKP1 family. (171 aa)
TCM_042594RP non-ATPase subunit 8A. (310 aa)
TCM_042729Rubisco activase isoform 2. (476 aa)
TCM_043118Cdc6_C domain-containing protein. (149 aa)
TCM_043262Uncharacterized protein; Belongs to the SKP1 family. (273 aa)
TCM_045209Regulatory particle triple-A 1A, putative. (293 aa)
TCM_044172Regulatory particle triple-A ATPase 3 isoform 1; Belongs to the AAA ATPase family. (401 aa)
TCM_045196Regulatory particle triple-A 1A; Belongs to the AAA ATPase family. (136 aa)
TCM_045202ATPase_AAA_core domain-containing protein. (93 aa)
TCM_012319Phosphatase 2A subunit A2, 65,PP2AA2 isoform 1. (587 aa)
TCM_013360DNA polymerase epsilon subunit B2 isoform 1. (596 aa)
TCM_013992Origin recognition complex protein 6, putative. (152 aa)
TCM_044169Regulatory particle triple-A ATPase 3 isoform 1; Belongs to the AAA ATPase family. (419 aa)
TCM_014274Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (677 aa)
TCM_044781Retinoblastoma-related 1. (1011 aa)
TCM_015256Uncharacterized protein. (682 aa)
TCM_014925F-box family protein, putative. (292 aa)
TCM_015202SKP1-like protein 21 isoform 1; Belongs to the SKP1 family. (357 aa)
TCM_015584NAC domain-containing protein 78, putative isoform 2. (658 aa)
TCM_015875Kinase superfamily protein, putative isoform 1. (954 aa)
TCM_016675Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (911 aa)
TCM_016615Proteasome component (PCI) domain protein isoform 1. (386 aa)
TCM_027051DNA binding protein-like. (485 aa)
TCM_028353Tesmin/TSO1-like CXC domain-containing protein isoform 1. (646 aa)
TCM_015535NAC domain class transcription factor, putative isoform 1. (576 aa)
TCM_028771Tesmin/TSO1-like CXC domain-containing protein. (575 aa)
TCM_029015SKP1-like 4; Belongs to the SKP1 family. (152 aa)
TCM_029263Regulatory particle triple-A 1A; Belongs to the AAA ATPase family. (426 aa)
TCM_029264Regulatory particle triple-A 1A isoform 1; Belongs to the AAA ATPase family. (426 aa)
TCM_016451DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
TCM_029247Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (325 aa)
TCM_029279P-loop containing nucleoside triphosphate hydrolases superfamily protein. (428 aa)
TCM_029512DNA helicase; Belongs to the MCM family. (786 aa)
TCM_029517Uncharacterized protein. (189 aa)
TCM_030206F-box family protein. (239 aa)
TCM_030019D6-type cyclin isoform 2; Belongs to the cyclin family. (327 aa)
TCM_046899Uncharacterized protein. (105 aa)
TCM_036772Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (235 aa)
TCM_046917Catalytic, putative. (401 aa)
TCM_047088DNA helicase; Belongs to the MCM family. (734 aa)
TCM_037162Transcription factor, putative isoform 1. (643 aa)
TCM_029276P-loop containing nucleoside triphosphate hydrolases superfamily protein. (135 aa)
TCM_03705526S proteasome regulatory subunit, putative isoform 2. (230 aa)
TCM_029362REPA_OB_2 domain-containing protein. (320 aa)
TCM_029400Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (235 aa)
TCM_046918Catalytic, putative. (358 aa)
TCM_037566Replication A 1A-like protein. (282 aa)
TCM_037986Regulatory particle triple-A ATPase 6A; Belongs to the AAA ATPase family. (417 aa)
TCM_037819Uncharacterized protein. (95 aa)
TCM_037852Tesmin/TSO1-like CXC domain-containing protein. (611 aa)
TCM_038379Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1. (940 aa)
TCM_040192Serine/threonine-protein phosphatase. (350 aa)
TCM_040678Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (867 aa)
TCM_037509Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (246 aa)
TCM_037567Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (628 aa)
TCM_041008Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (249 aa)
TCM_041032Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (249 aa)
TCM_041398Nuclear factor Y. (161 aa)
TCM_041332NAC domain protein, IPR003441, putative isoform 1. (407 aa)
TCM_041469DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2213 aa)
TCM_041648Cell division control protein; Belongs to the CDC6/cdc18 family. (511 aa)
TCM_040784Uncharacterized protein. (130 aa)
TCM_045760Serine/threonine-protein phosphatase. (306 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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