STRINGSTRING
TCM_029896 TCM_029896 TCM_037836 TCM_037836 TCM_030350 TCM_030350 TCM_039669 TCM_039669 TCM_037551 TCM_037551 ABH1 ABH1 GTF2H2 GTF2H2 TCM_041171 TCM_041171 TCM_038415 TCM_038415 TCM_041752 TCM_041752 TCM_039510 TCM_039510 TCM_042326 TCM_042326 TCM_041746 TCM_041746 TCM_025224 TCM_025224 TCM_026625 TCM_026625 TCM_030593 TCM_030593 TCM_026818 TCM_026818 TCM_024640 TCM_024640 TCM_026816 TCM_026816 TCM_030629 TCM_030629 TCM_030595 TCM_030595 TCM_030627 TCM_030627 TCM_032430 TCM_032430 RpoB RpoB TCM_034099 TCM_034099 TCM_030624 TCM_030624 TCM_001045 TCM_001045 TCM_001258 TCM_001258 TCM_001448 TCM_001448 TCM_001525 TCM_001525 TCM_004402 TCM_004402 TCM_005864 TCM_005864 TCM_006940 TCM_006940 TCM_007538 TCM_007538 TCM_047002 TCM_047002 TCM_008184 TCM_008184 TCM_008392 TCM_008392 TCM_010409 TCM_010409 TCM_007121 TCM_007121 TCM_019289 TCM_019289 TCM_019935 TCM_019935 TCM_020238 TCM_020238 TCM_020785 TCM_020785 PHP PHP TCM_020578 TCM_020578 TCM_034139 TCM_034139 TCM_035096 TCM_035096 TCM_035426 TCM_035426 TCM_036239 TCM_036239 TCM_036194 TCM_036194 TCM_043099 TCM_043099 TCM_043339 TCM_043339 TCM_043923 TCM_043923 TCM_043328 TCM_043328 TCM_043340 TCM_043340 TCM_044683 TCM_044683 TCM_044643 TCM_044643 TCM_043926 TCM_043926 TCM_044777 TCM_044777 TCM_044843 TCM_044843 TCM_044852 TCM_044852 TCM_045027 TCM_045027 TCM_045561 TCM_045561 TCM_045327 TCM_045327 TCM_042442 TCM_042442 TCM_042873 TCM_042873 TCM_043250 TCM_043250 TCM_043345 TCM_043345 TCM_044682 TCM_044682 TCM_044847 TCM_044847 TCM_014228 TCM_014228 TCM_045322 TCM_045322 TCM_014598 TCM_014598 TCM_028891 TCM_028891 TCM_015104 TCM_015104 TCM_016369 TCM_016369 TCM_016301 TCM_016301 TCM_016608 TCM_016608 TCM_027783 TCM_027783 TCM_029312 TCM_029312 TCM_029879 TCM_029879 TCM_029901 TCM_029901 TCM_029910 TCM_029910 TCM_029914 TCM_029914 TCM_036908 TCM_036908 TCM_021339 TCM_021339 TCM_019685 TCM_019685 TCM_021549 TCM_021549 TCM_021968 TCM_021968 TCM_024387 TCM_024387 TCM_021715 TCM_021715
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_029896RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
TCM_037836Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1. (206 aa)
TCM_030350Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (549 aa)
TCM_039669DNA-directed RNA polymerase II, putative isoform 1. (208 aa)
TCM_037551Binding isoform 1. (1094 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
GTF2H2General transcription factor IIH subunit. (420 aa)
TCM_041171annotation not available (646 aa)
TCM_038415Ubiquitin-like superfamily protein. (103 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
TCM_039510RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (469 aa)
TCM_042326RNA polymerases N / 8 kDa subunit. (71 aa)
TCM_041746BTB/POZ domain-containing protein; Belongs to the SKP1 family. (98 aa)
TCM_025224ARC6-like protein isoform 1. (829 aa)
TCM_026625Cyclin-H1-1 isoform 1; Belongs to the cyclin family. (426 aa)
TCM_030593Transcription elongation factor family protein. (401 aa)
TCM_026818Global transcription factor C isoform 1. (1065 aa)
TCM_024640Uncharacterized protein. (247 aa)
TCM_026816Global transcription factor C isoform 1. (1071 aa)
TCM_030629Transcription elongation factor family protein. (325 aa)
TCM_030595Transcription elongation factor family protein. (294 aa)
TCM_030627Transcription elongation factor family protein. (324 aa)
TCM_032430RNA polymerase Rpb8 isoform 1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (145 aa)
RpoBRNA polymerase subunit beta. (125 aa)
TCM_034099Cyclin family protein, putative isoform 1; Belongs to the cyclin family. (539 aa)
TCM_030624Transcription elongation factor family protein. (401 aa)
TCM_001045Cak assembly factor, putative. (191 aa)
TCM_001258RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
TCM_001448Global transcription factor group A2, putative. (863 aa)
TCM_001525Transcription elongation factor (TFIIS) family protein, putative isoform 1. (336 aa)
TCM_004402RAD3-like DNA-binding helicase protein isoform 1. (780 aa)
TCM_005864DNA-directed RNA polymerase II subunit RPB11. (169 aa)
TCM_006940RNA polymerase II ctd phosphatase, putative. (237 aa)
TCM_007538Emb:CAB89363.1. (644 aa)
TCM_047002Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
TCM_008184CAP-binding protein 20 isoform 1. (309 aa)
TCM_008392RNA polymerase II C-terminal domain phosphatase-like 3, putative. (1290 aa)
TCM_010409RNA polymerases N / 8 kDa subunit. (113 aa)
TCM_007121DNA-directed RNA polymerase family protein. (318 aa)
TCM_019289RNA polymerase II transcription elongation factor, putative isoform 1. (331 aa)
TCM_019935RNA polymerase Rpb8, putative isoform 1. (188 aa)
TCM_020238Electron transport complex protein rnfC, putative isoform 1. (539 aa)
TCM_020785DNA-directed RNA polymerase II subunit RPB7, putative isoform 1. (190 aa)
PHPPAF1 complex component isoform 1. (413 aa)
TCM_020578Cyclin family protein isoform 1; Belongs to the cyclin family. (536 aa)
TCM_034139JHL18I08.10 protein isoform 2. (260 aa)
TCM_035096Basal transcription factor complex subunit-related isoform 1. (296 aa)
TCM_035426Transcription elongation factor SPT5. (1041 aa)
TCM_036239Cysteine/Histidine-rich C1 domain family protein, putative. (340 aa)
TCM_036194Cysteine/Histidine-rich C1 domain family protein, putative. (663 aa)
TCM_043099Transcription initiation factor IIF isoform 2. (263 aa)
TCM_043339Cysteine/Histidine-rich C1 domain family protein, putative. (722 aa)
TCM_043923Cysteine/Histidine-rich C1 domain family protein, putative. (675 aa)
TCM_043328Kow domain-containing transcription factor 1, putative. (1596 aa)
TCM_043340C1_2 domain-containing protein. (159 aa)
TCM_044683Global transcription factor group, putative isoform 1. (302 aa)
TCM_044643Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1617 aa)
TCM_043926Cysteine/Histidine-rich C1 domain family protein, putative. (673 aa)
TCM_044777RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (395 aa)
TCM_044843RNA polymerase Rpb7-like, N-terminal domain isoform 1. (176 aa)
TCM_044852RNA polymerase Rpb7-like, N-terminal domain. (176 aa)
TCM_045027Transcription elongation factor (TFIIS) family protein, putative. (351 aa)
TCM_045561Transcript elongation factor IIS, putative. (347 aa)
TCM_045327RNA polymerase II fifth largest subunit, putative isoform 1. (263 aa)
TCM_042442Cysteine/Histidine-rich C1 domain family protein, putative. (352 aa)
TCM_042873Cysteine/Histidine-rich C1 domain family protein, putative. (446 aa)
TCM_043250RNA polymerase Rpb8, putative; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (152 aa)
TCM_043345Uncharacterized protein. (681 aa)
TCM_044682SH2_2 domain-containing protein. (494 aa)
TCM_044847RNA polymerase Rpb7-like, N-terminal domain. (176 aa)
TCM_014228Leo1-like family protein isoform 1. (630 aa)
TCM_045322Transcription elongation factor (TFIIS) family protein, putative isoform 1. (337 aa)
TCM_014598RNA_pol_Rpb2_5 domain-containing protein. (118 aa)
TCM_028891Hydroxyproline-rich glycoprotein family protein isoform 1. (685 aa)
TCM_015104DNA-directed RNA polymerase II subunit protein isoform 1. (143 aa)
TCM_016369Uncharacterized protein isoform 1. (657 aa)
TCM_016301Xeroderma pigmentosum complementation group B 1 isoform 1. (771 aa)
TCM_016608Transcription elongation factor (TFIIS) family protein. (493 aa)
TCM_027783DNA directed RNA polymerase, 7 kDa subunit. (51 aa)
TCM_029312Cyclin family protein, putative isoform 1; Belongs to the cyclin family. (597 aa)
TCM_029879DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1189 aa)
TCM_029901Tetratricopeptide repeat-like superfamily protein, putative isoform 1. (736 aa)
TCM_029910C-terminal domain phosphatase-like 1 isoform 2. (984 aa)
TCM_029914PAF1 complex component isoform 1. (660 aa)
TCM_036908DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1184 aa)
TCM_021339DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
TCM_019685Transcript elongation factor IIS, putative. (367 aa)
TCM_021549Kinase interacting family protein, putative. (301 aa)
TCM_021968Uncharacterized protein isoform 1. (429 aa)
TCM_024387Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1. (228 aa)
TCM_021715RNA polymerase II C-terminal domain phosphatase-like 2 isoform 1. (862 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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