59 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_023509	Uncharacterized protein. (344 aa)
	TCM_024263	Uncharacterized protein. (142 aa)
	TCM_033222	Retrotransposon protein, putative. (831 aa)
	TCM_032553	Gag protease polyprotein. (520 aa)
	TCM_033265	Retrotransposon, Ty3-gypsy subclass-like protein. (529 aa)
	TCM_033158	Gag protease polyprotein. (601 aa)
	TCM_033493	Retrotrans_gag domain-containing protein. (502 aa)
	TCM_030553	Ubiquitin family protein. (409 aa)
	TCM_033634	Retrotransposon protein, putative. (254 aa)
	TCM_032932	Uncharacterized protein. (103 aa)
	TCM_033345	DNA/RNA polymerases superfamily protein. (1502 aa)
	TCM_036595	CCHC-type domain-containing protein. (324 aa)
	TCM_043763	DNA/RNA polymerases superfamily protein. (906 aa)
	TCM_043787	Integrase catalytic domain-containing protein. (649 aa)
	TCM_044877	DNA/RNA polymerases superfamily protein, putative. (1347 aa)
	TCM_044063	Uncharacterized protein. (72 aa)
	TCM_012960	Gag protease polyprotein. (382 aa)
	TCM_012637	Integrase catalytic domain-containing protein. (634 aa)
	TCM_013113	Retrotransposon protein, putative. (1145 aa)
	TCM_043976	Uncharacterized protein. (239 aa)
	TCM_013491	Uncharacterized protein. (266 aa)
	TCM_013214	Uncharacterized protein. (148 aa)
	TCM_013681	DNA/RNA polymerases superfamily protein. (1188 aa)
	TCM_013367	Uncharacterized protein. (440 aa)
	TCM_013852	Uncharacterized protein. (133 aa)
	TCM_027334	Uncharacterized protein. (468 aa)
	TCM_027940	Reverse transcriptase domain-containing protein. (1052 aa)
	TCM_028160	Integrase catalytic domain-containing protein. (692 aa)
	TCM_028292	DNA/RNA polymerases superfamily protein. (1290 aa)
	TCM_027898	DNA/RNA polymerases superfamily protein. (371 aa)
	TCM_038736	Integrase catalytic domain-containing protein. (1486 aa)
	TCM_039220	Uncharacterized protein. (70 aa)
	TCM_040115	Integrase catalytic domain-containing protein. (363 aa)
	TCM_045983	Gag protease polyprotein-like protein. (665 aa)
	TCM_002551	Uncharacterized protein. (95 aa)
	TCM_002711	Uncharacterized protein. (249 aa)
	TCM_002991	Gag protease polyprotein. (548 aa)
	TCM_003206	Integrase catalytic domain-containing protein. (694 aa)
	TCM_002794	Reverse transcriptase domain-containing protein. (509 aa)
	TCM_003326	CCHC-type domain-containing protein. (459 aa)
	TCM_003198	Uncharacterized protein. (481 aa)
	TCM_003807	Gag protease polyprotein, putative. (132 aa)
	TCM_003298	DNA/RNA polymerases superfamily protein. (1119 aa)
	TCM_003698	DNA/RNA polymerases superfamily protein. (1336 aa)
	TCM_008506	Uncharacterized protein. (95 aa)
	TCM_009998	DNA/RNA polymerases superfamily protein. (1537 aa)
	TCM_009549	DNA/RNA polymerases superfamily protein. (1515 aa)
	TCM_017930	Uncharacterized protein. (234 aa)
	TCM_018243	DNA/RNA polymerases superfamily protein. (1447 aa)
	TCM_017838	Reverse transcriptase domain-containing protein. (394 aa)
	TCM_017887	DNA/RNA polymerases superfamily protein. (340 aa)
	TCM_019247	Integrase catalytic domain-containing protein. (544 aa)
	TCM_017418	Gag protease polyprotein. (368 aa)
	TCM_023155	Gag protease polyprotein. (566 aa)
	TCM_023962	Uncharacterized protein. (208 aa)
	TCM_023267	Uncharacterized protein. (182 aa)
	TCM_023542	DNA/RNA polymerases superfamily protein. (1110 aa)
	TCM_023737	Integrase catalytic domain-containing protein. (513 aa)
	TCM_002384	Gag protease polyprotein, putative. (307 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_002794	TCM_012637	A0A061DN37	A0A061FVJ1	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.470
TCM_002794	TCM_019247	A0A061DN37	A0A061EG57	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.466
TCM_003206	TCM_023509	A0A061DMP8	A0A061F2D7	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.474
TCM_012637	TCM_002794	A0A061FVJ1	A0A061DN37	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.470
TCM_012637	TCM_017838	A0A061FVJ1	A0A061EF33	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.464
TCM_012637	TCM_023509	A0A061FVJ1	A0A061F2D7	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.419
TCM_012637	TCM_033634	A0A061FVJ1	A0A061FC59	Integrase catalytic domain-containing protein.	Retrotransposon protein, putative.	0.440
TCM_017838	TCM_012637	A0A061EF33	A0A061FVJ1	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.464
TCM_017838	TCM_019247	A0A061EF33	A0A061EG57	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.458
TCM_019247	TCM_002794	A0A061EG57	A0A061DN37	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.466
TCM_019247	TCM_017838	A0A061EG57	A0A061EF33	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.458
TCM_019247	TCM_023509	A0A061EG57	A0A061F2D7	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.405
TCM_019247	TCM_033634	A0A061EG57	A0A061FC59	Integrase catalytic domain-containing protein.	Retrotransposon protein, putative.	0.415
TCM_023509	TCM_003206	A0A061F2D7	A0A061DMP8	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.474
TCM_023509	TCM_012637	A0A061F2D7	A0A061FVJ1	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.419
TCM_023509	TCM_019247	A0A061F2D7	A0A061EG57	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.405
TCM_023509	TCM_023542	A0A061F2D7	A0A061EVL2	Uncharacterized protein.	DNA/RNA polymerases superfamily protein.	0.463
TCM_023509	TCM_033634	A0A061F2D7	A0A061FC59	Uncharacterized protein.	Retrotransposon protein, putative.	0.475
TCM_023542	TCM_023509	A0A061EVL2	A0A061F2D7	DNA/RNA polymerases superfamily protein.	Uncharacterized protein.	0.463
TCM_033634	TCM_012637	A0A061FC59	A0A061FVJ1	Retrotransposon protein, putative.	Integrase catalytic domain-containing protein.	0.440