STRINGSTRING
TCM_007621 TCM_007621 TCM_011968 TCM_011968 TCM_041482 TCM_041482 TCM_012179 TCM_012179
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_007621Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (499 aa)
TCM_011968Betaine aldehyde dehydrogenase 1; Belongs to the aldehyde dehydrogenase family. (998 aa)
TCM_041482Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (456 aa)
TCM_012179Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (470 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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