19 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_016930	Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
	TCM_020171	Nucleic acid-binding proteins superfamily isoform 1. (393 aa)
	TCM_021436	30S ribosomal protein S1, chloroplastic. (443 aa)
	TCM_026126	Nucleic acid-binding isoform 3. (221 aa)
	TCM_025836	Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
	TCM_025027	RNA binding,RNA binding isoform 1. (1824 aa)
	TCM_034192	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1. (1185 aa)
	TCM_034195	DNA-directed RNA polymerases, putative isoform 1. (243 aa)
	TCM_035807	Nucleic acid-binding proteins superfamily isoform 2. (521 aa)
	TCM_044683	Global transcription factor group, putative isoform 1. (302 aa)
	TCM_044643	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1617 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_016157	Eukaryotic translation initiation factor 2 subunit 1. (340 aa)
	TCM_016217	Nucleic acid-binding, OB-fold-like protein, putative isoform 1. (747 aa)
	TCM_014586	Nucleic acid-binding, OB-fold-like protein isoform 1. (677 aa)
	TCM_016377	Nucleic acid-binding isoform 1. (149 aa)
	EFTS-2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (1064 aa)
	TCM_041752	DNA-directed RNA polymerase II isoform 1. (176 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTS-2	TCM_016377	A0A061GLJ7	A0A061GCW8	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Nucleic acid-binding isoform 1.	0.417
EFTS-2	TCM_016930	A0A061GLJ7	A0A061ECS9	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative isoform 1.	0.533
EFTS-2	TCM_020171	A0A061GLJ7	A0A061EJM2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Nucleic acid-binding proteins superfamily isoform 1.	0.835
EFTS-2	TCM_021436	A0A061GLJ7	A0A061EPQ4	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	30S ribosomal protein S1, chloroplastic.	0.835
EFTS-2	TCM_025027	A0A061GLJ7	A0A061F521	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	RNA binding,RNA binding isoform 1.	0.835
EFTS-2	TCM_025836	A0A061GLJ7	A0A061F1B1	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase isoform 1.	0.574
EFTS-2	TCM_035807	A0A061GLJ7	A0A061FIY7	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Nucleic acid-binding proteins superfamily isoform 2.	0.835
TCM_001299	TCM_012055	A0A061DIE4	A0A061G112	Ribosomal RNA processing 4.	PNAS-3 related isoform 1.	0.999
TCM_001299	TCM_020171	A0A061DIE4	A0A061EJM2	Ribosomal RNA processing 4.	Nucleic acid-binding proteins superfamily isoform 1.	0.782
TCM_001299	TCM_021436	A0A061DIE4	A0A061EPQ4	Ribosomal RNA processing 4.	30S ribosomal protein S1, chloroplastic.	0.782
TCM_001299	TCM_025027	A0A061DIE4	A0A061F521	Ribosomal RNA processing 4.	RNA binding,RNA binding isoform 1.	0.945
TCM_001299	TCM_026126	A0A061DIE4	A0A061F0F8	Ribosomal RNA processing 4.	Nucleic acid-binding isoform 3.	0.993
TCM_001299	TCM_034192	A0A061DIE4	A0A061FE18	Ribosomal RNA processing 4.	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1.	0.438
TCM_001299	TCM_035807	A0A061DIE4	A0A061FIY7	Ribosomal RNA processing 4.	Nucleic acid-binding proteins superfamily isoform 2.	0.782
TCM_012055	TCM_001299	A0A061G112	A0A061DIE4	PNAS-3 related isoform 1.	Ribosomal RNA processing 4.	0.999
TCM_012055	TCM_020171	A0A061G112	A0A061EJM2	PNAS-3 related isoform 1.	Nucleic acid-binding proteins superfamily isoform 1.	0.753
TCM_012055	TCM_021436	A0A061G112	A0A061EPQ4	PNAS-3 related isoform 1.	30S ribosomal protein S1, chloroplastic.	0.753
TCM_012055	TCM_025027	A0A061G112	A0A061F521	PNAS-3 related isoform 1.	RNA binding,RNA binding isoform 1.	0.916
TCM_012055	TCM_026126	A0A061G112	A0A061F0F8	PNAS-3 related isoform 1.	Nucleic acid-binding isoform 3.	0.994
TCM_012055	TCM_034192	A0A061G112	A0A061FE18	PNAS-3 related isoform 1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1.	0.426