STRINGSTRING
TCM_000214 TCM_000214 TCM_001066 TCM_001066 TCM_001192 TCM_001192 TCM_000667 TCM_000667 TCM_003170 TCM_003170 TCM_003976 TCM_003976 TCM_002146 TCM_002146 TCM_002303 TCM_002303 TCM_005932 TCM_005932 TCM_005726 TCM_005726 TCM_005460 TCM_005460 TCM_006288 TCM_006288 TCM_006420 TCM_006420 TCM_006095 TCM_006095 TCM_006150 TCM_006150 TCM_006427 TCM_006427 TCM_006944 TCM_006944 TCM_007096 TCM_007096 TCM_007433 TCM_007433 TCM_010105 TCM_010105 TCM_010663 TCM_010663 TCM_010741 TCM_010741 TCM_010631 TCM_010631 TCM_010743 TCM_010743 TCM_007746 TCM_007746 TCM_011838 TCM_011838 TCM_016948 TCM_016948 TCM_017073 TCM_017073 TCM_018358 TCM_018358 TCM_010664 TCM_010664 TCM_017806 TCM_017806 TCM_047036 TCM_047036 TCM_020880 TCM_020880 TCM_020907 TCM_020907 TCM_020965 TCM_020965 TCM_021412 TCM_021412 TCM_021159 TCM_021159 TCM_021691 TCM_021691 TCM_047046 TCM_047046 TCM_021767 TCM_021767 TCM_021972 TCM_021972 LOS4 LOS4 TCM_022290 TCM_022290 TCM_022360 TCM_022360 TCM_022364 TCM_022364 TCM_022448 TCM_022448 TCM_024698 TCM_024698 TCM_025007 TCM_025007 TCM_025327 TCM_025327 TCM_026199 TCM_026199 TCM_026181 TCM_026181 TCM_030741 TCM_030741 TCM_031179 TCM_031179 TCM_026673 TCM_026673 TCM_033795 TCM_033795 TCM_030647 TCM_030647 TCM_034654 TCM_034654 TCM_034587 TCM_034587 TCM_032429 TCM_032429 TCM_033734 TCM_033734 TCM_035855 TCM_035855 TCM_036687 TCM_036687 TCM_043050 TCM_043050 TCM_042670 TCM_042670 TCM_043474 TCM_043474 TCM_044507 TCM_044507 TCM_036589 TCM_036589 TCM_012106 TCM_012106 TCM_012319 TCM_012319 TCM_012521 TCM_012521 TCM_043567 TCM_043567 TCM_013963 TCM_013963 TCM_014303 TCM_014303 TCM_044574 TCM_044574 TCM_045257 TCM_045257 TCM_014807 TCM_014807 TCM_015155 TCM_015155 TCM_015799 TCM_015799 TCM_016346 TCM_016346 TCM_014995 TCM_014995 TCM_027151 TCM_027151 TCM_015191 TCM_015191 TCM_028841 TCM_028841 TCM_028903 TCM_028903 TCM_030180 TCM_030180 TCM_030384 TCM_030384 TCM_036809 TCM_036809 TCM_028922 TCM_028922 TCM_029003 TCM_029003 TCM_037229 TCM_037229 TCM_037270 TCM_037270 TCM_037594 TCM_037594 TCM_038307 TCM_038307 TCM_040914 TCM_040914 TCM_040864 TCM_040864 ABH1 ABH1 TCM_037948 TCM_037948 TCM_041549 TCM_041549 TCM_041749 TCM_041749 TCM_041883 TCM_041883 TCM_042209 TCM_042209 TCM_045760 TCM_045760
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000214Transducin/WD40 repeat-like superfamily protein. (787 aa)
TCM_001066RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1. (221 aa)
TCM_001192SAP domain-containing protein isoform 1. (780 aa)
TCM_000667Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (659 aa)
TCM_003170Eukaryotic release factor 1-3 isoform 1. (436 aa)
TCM_003976Calcium-binding EF-hand family protein. (545 aa)
TCM_002146Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (545 aa)
TCM_002303HnRNP isoform 1. (477 aa)
TCM_005932RNA-binding family protein. (253 aa)
TCM_005726Mago nashi family protein. (151 aa)
TCM_005460SIN3 associated polypeptide P18. (153 aa)
TCM_006288Target of rapamycin; Belongs to the PI3/PI4-kinase family. (3831 aa)
TCM_006420Partner of Y14-MAGO isoform 1. (232 aa)
TCM_006095Cleavage and polyadenylation specificity factor 30. (698 aa)
TCM_006150Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
TCM_006427Protein interaction regulator family protein isoform 1. (427 aa)
TCM_006944Cleavage and polyadenylation specificity factor 73-I. (694 aa)
TCM_007096Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (645 aa)
TCM_007433RNA-binding family protein isoform 1. (194 aa)
TCM_010105Serine/threonine-protein phosphatase. (306 aa)
TCM_010663RNA-binding family protein isoform 1. (653 aa)
TCM_010741Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (523 aa)
TCM_010631Nucleoporin GLE1, putative isoform 1. (673 aa)
TCM_010743Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (518 aa)
TCM_007746Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
TCM_011838Phosphatase 2A subunit A2, 65,PP2AA2. (587 aa)
TCM_016948Transducin/WD40 repeat-like superfamily protein. (344 aa)
TCM_017073Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (525 aa)
TCM_018358Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (443 aa)
TCM_010664RNA-binding family protein isoform 4. (697 aa)
TCM_017806Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (301 aa)
TCM_047036Eukaryotic release factor 1-3. (437 aa)
TCM_020880Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (501 aa)
TCM_020907Calcium-binding EF-hand family protein isoform 1. (536 aa)
TCM_020965RNA-binding family protein isoform 1. (533 aa)
TCM_021412Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (555 aa)
TCM_021159Tonneau 2 (TON2), 2 isoform 1. (477 aa)
TCM_021691HEAT repeat-containing protein isoform 1. (1338 aa)
TCM_047046Poly(A) polymerase 1. (788 aa)
TCM_021767mRNA capping enzyme family protein isoform 1. (699 aa)
TCM_021972RNA-binding family protein. (240 aa)
LOS4P-loop containing nucleoside triphosphate hydrolases superfamily protein. (502 aa)
TCM_022290Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (496 aa)
TCM_022360Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (370 aa)
TCM_022364Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (637 aa)
TCM_022448ENTH/VHS family protein, putative isoform 1. (1125 aa)
TCM_024698PCF11P-similar protein 4. (384 aa)
TCM_025007Serine/threonine-protein phosphatase. (313 aa)
TCM_025327Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (377 aa)
TCM_026199Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (342 aa)
TCM_026181Calcium-binding EF-hand family protein isoform 1. (539 aa)
TCM_030741RNA-binding family protein isoform 6. (481 aa)
TCM_031179mRNA cap guanine-N7 methyltransferase. (372 aa)
TCM_026673Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)
TCM_033795Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (648 aa)
TCM_030647RNA-binding family protein isoform 1. (709 aa)
TCM_034654RNA-binding family protein, putative. (401 aa)
TCM_034587Uncharacterized protein isoform 1. (1337 aa)
TCM_032429Arginine/serine-rich 45. (434 aa)
TCM_033734RNA-binding family protein, putative isoform 1. (262 aa)
TCM_035855Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
TCM_036687Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (453 aa)
TCM_043050Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
TCM_042670Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (320 aa)
TCM_043474S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. (357 aa)
TCM_044507Tetratricopeptide repeat-like superfamily protein isoform 1. (761 aa)
TCM_036589Cleavage stimulation factor 64 kDa subunit, putative. (521 aa)
TCM_012106Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (512 aa)
TCM_012319Phosphatase 2A subunit A2, 65,PP2AA2 isoform 1. (587 aa)
TCM_012521Poly(A) polymerase 1 isoform 1. (762 aa)
TCM_043567Ssu72-like family protein isoform 1. (193 aa)
TCM_013963Eukaryotic release factor 1-3 isoform 1. (437 aa)
TCM_014303Transducin/WD40 repeat-like superfamily protein isoform 1. (436 aa)
TCM_044574Region-like protein isoform 2. (607 aa)
TCM_045257Transducin/WD40 repeat-like superfamily protein. (722 aa)
TCM_014807RNA-binding family protein. (230 aa)
TCM_015155Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (200 aa)
TCM_015799Regulator of nonsense transcripts 1. (1266 aa)
TCM_016346Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (336 aa)
TCM_014995Cleavage and polyadenylation specificity factor 160 isoform 1. (1457 aa)
TCM_027151DEAD/DEAH box RNA helicase family protein isoform 1. (427 aa)
TCM_015191Cleavage and polyadenylation specificity factor subunit 2. (742 aa)
TCM_028841Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
TCM_028903Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (698 aa)
TCM_030180PCF11P-similar protein 4, putative isoform 1. (1004 aa)
TCM_030384RNA-binding family protein isoform 3. (497 aa)
TCM_036809Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1. (778 aa)
TCM_028922Poly(A) binding protein 6, putative isoform 3. (625 aa)
TCM_029003Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (515 aa)
TCM_037229Poly(A) polymerase 1 isoform 1. (817 aa)
TCM_037270Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (511 aa)
TCM_037594Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (219 aa)
TCM_038307Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (503 aa)
TCM_040914Smg-7, putative isoform 1. (989 aa)
TCM_040864RNA-binding family protein. (199 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
TCM_037948Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (545 aa)
TCM_041549Poly(A) binding protein 7, putative. (366 aa)
TCM_041749Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (308 aa)
TCM_041883RNA-binding family protein. (241 aa)
TCM_042209TBP-associated factor 15B isoform 1. (468 aa)
TCM_045760Serine/threonine-protein phosphatase. (306 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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