STRINGSTRING
TCM_000427 TCM_000427 TCM_000407 TCM_000407 TCM_000813 TCM_000813 TCM_001034 TCM_001034 TCM_001356 TCM_001356 TCM_001192 TCM_001192 TCM_000425 TCM_000425 LSM5 LSM5 TCM_003324 TCM_003324 TCM_004856 TCM_004856 TCM_004826 TCM_004826 TCM_004650 TCM_004650 TCM_002445 TCM_002445 TCM_002491 TCM_002491 TCM_005909 TCM_005909 TCM_005726 TCM_005726 TCM_004219 TCM_004219 TCM_004356 TCM_004356 TCM_046691 TCM_046691 TCM_005096 TCM_005096 TCM_007486 TCM_007486 TCM_007427 TCM_007427 TCM_007259 TCM_007259 TCM_008068 TCM_008068 TCM_010249 TCM_010249 TCM_010257 TCM_010257 TCM_010310 TCM_010310 TCM_011260 TCM_011260 TCM_011316 TCM_011316 TCM_010780 TCM_010780 TCM_007489 TCM_007489 TCM_007746 TCM_007746 TCM_017030 TCM_017030 TCM_016971 TCM_016971 TCM_017709 TCM_017709 TCM_011085 TCM_011085 TCM_011273 TCM_011273 TCM_011517 TCM_011517 TCM_019848 TCM_019848 TCM_019826 TCM_019826 TCM_019845 TCM_019845 TCM_016908 TCM_016908 TCM_020154 TCM_020154 TCM_020910 TCM_020910 TCM_021228 TCM_021228 TCM_020891 TCM_020891 TCM_020986 TCM_020986 TCM_021458 TCM_021458 TCM_022302 TCM_022302 TCM_021972 TCM_021972 TCM_022702 TCM_022702 TCM_020947 TCM_020947 TCM_022624 TCM_022624 TCM_023910 TCM_023910 TCM_025029 TCM_025029 TCM_021961 TCM_021961 TCM_025242 TCM_025242 TCM_026747 TCM_026747 TCM_030585 TCM_030585 LSM8 LSM8 TCM_031723 TCM_031723 TCM_026195 TCM_026195 TCM_032152 TCM_032152 TCM_032899 TCM_032899 TCM_032398 TCM_032398 TCM_030526 TCM_030526 TCM_030592 TCM_030592 TCM_034192 TCM_034192 TCM_034385 TCM_034385 TCM_034659 TCM_034659 TCM_033734 TCM_033734 TCM_036535 TCM_036535 TCM_042977 TCM_042977 TCM_043024 TCM_043024 TCM_043010 TCM_043010 TCM_042785 TCM_042785 TCM_043209 TCM_043209 TCM_043324 TCM_043324 LSM3 LSM3 TCM_044779 TCM_044779 TCM_045023 TCM_045023 TCM_042754 TCM_042754 TCM_042793 TCM_042793 TCM_012168 TCM_012168 TCM_043735 TCM_043735 TCM_014265 TCM_014265 TCM_014166 TCM_014166 TCM_045030 TCM_045030 TCM_015504 TCM_015504 TCM_015872 TCM_015872 TCM_016294 TCM_016294 TCM_016407 TCM_016407 TCM_026902 TCM_026902 TCM_026981 TCM_026981 TCM_027096 TCM_027096 TCM_027151 TCM_027151 TCM_026952 TCM_026952 TCM_015090 TCM_015090 TCM_027148 TCM_027148 TCM_015383 TCM_015383 TCM_029008 TCM_029008 TCM_027427 TCM_027427 TCM_029917 TCM_029917 TCM_030360 TCM_030360 TCM_036891 TCM_036891 TCM_036839 TCM_036839 TCM_038062 TCM_038062 TCM_029973 TCM_029973 TCM_038810 TCM_038810 TCM_038404 TCM_038404 TCM_039191 TCM_039191 TCM_040038 TCM_040038 TCM_040897 TCM_040897 TCM_040864 TCM_040864 TCM_041395 TCM_041395 ABH1 ABH1 TCM_041484 TCM_041484 TCM_041518 TCM_041518 TCM_041599 TCM_041599 TCM_041862 TCM_041862 TCM_039217 TCM_039217 TCM_039496 TCM_039496 TCM_041519 TCM_041519 TCM_041868 TCM_041868 TCM_041883 TCM_041883 TCM_042032 TCM_042032 TCM_042209 TCM_042209 TCM_042243 TCM_042243
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000427U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (585 aa)
TCM_000407U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
TCM_000813CCCH-type zinc fingerfamily protein with RNA-binding domain. (495 aa)
TCM_001034ATP-dependent RNA helicase DEAH11, chloroplastic. (1758 aa)
TCM_001356Pre-mRNA-splicing factor isy-1. (301 aa)
TCM_001192SAP domain-containing protein isoform 1. (780 aa)
TCM_000425RNA-binding family protein isoform 1. (367 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_003324U2 small nuclear ribonucleoprotein A. (286 aa)
TCM_004856Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 3. (746 aa)
TCM_004826P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (838 aa)
TCM_004650RNA-binding family protein isoform 1. (353 aa)
TCM_002445RNA-binding family protein isoform 1. (344 aa)
TCM_002491Sm domain-containing protein. (359 aa)
TCM_005909Small nuclear ribonucleoprotein family protein. (99 aa)
TCM_005726Mago nashi family protein. (151 aa)
TCM_004219Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1. (279 aa)
TCM_004356Splicing factor Prp18 family protein isoform 1. (415 aa)
TCM_046691Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
TCM_005096RNA-binding family protein isoform 1. (283 aa)
TCM_007486Serine/arginine rich splicing factor, putative isoform 1. (268 aa)
TCM_007427Splicing factor, putative. (1266 aa)
TCM_007259Pre-mRNA-processing protein 40B, putative. (1025 aa)
TCM_008068Pre-mRNA splicing factor-related. (1033 aa)
TCM_010249Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1. (485 aa)
TCM_010257RS-containing zinc finger protein 21 isoform 1. (177 aa)
TCM_010310Splicing factor PWI domain-containing protein / RNA recognition motif-containing protein isoform 1. (942 aa)
TCM_011260THO complex subunit 2 isoform 1. (1853 aa)
TCM_011316SWAP/surp domain-containing protein / ubiquitin family protein. (818 aa)
TCM_010780RNA helicase family protein isoform 1. (700 aa)
TCM_007489WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related. (572 aa)
TCM_007746Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
TCM_017030RNA recognition motif-containing protein isoform 1. (197 aa)
TCM_016971RNA-binding family protein isoform 1. (368 aa)
TCM_017709PRP38 family protein isoform 1. (446 aa)
TCM_011085Pre-mRNA-processing protein 40C. (816 aa)
TCM_011273Small nuclear ribonucleoprotein Sm D2. (107 aa)
TCM_011517RNA helicase family protein isoform 1. (764 aa)
TCM_019848Transducin/WD40 repeat-like superfamily protein isoform 1. (342 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_019845Chloroplast heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family. (704 aa)
TCM_016908DEAD-box ATP-dependent RNA helicase 46 isoform 2; Belongs to the DEAD box helicase family. (772 aa)
TCM_020154P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family. (687 aa)
TCM_020910Uncharacterized protein. (149 aa)
TCM_021228Pleiotropic regulatory locus 1. (486 aa)
TCM_020891Pre-mRNA splicing Prp18-interacting factor isoform 1. (536 aa)
TCM_020986MOS4-associated complex 3A. (523 aa)
TCM_021458DEAD box RNA helicase family protein isoform 2. (1158 aa)
TCM_022302Hydroxyproline-rich glycoprotein family protein. (338 aa)
TCM_021972RNA-binding family protein. (240 aa)
TCM_022702Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
TCM_020947Splicing factor U2AF 50 kDa subunit, putative. (1032 aa)
TCM_022624Small nuclear ribonucleoprotein G. (80 aa)
TCM_023910WW domain-containing protein, putative isoform 1. (473 aa)
TCM_025029Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1391 aa)
TCM_021961Heat shock cognate protein 70-1 isoform 1; Belongs to the heat shock protein 70 family. (646 aa)
TCM_025242Aquarius. (1539 aa)
TCM_026747C2H2 and C2HC zinc fingers superfamily protein isoform 1. (202 aa)
TCM_030585Cwf15 / Cwc15 cell cycle control family protein. (227 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
TCM_031723RNA-binding family protein. (429 aa)
TCM_026195Cell division cycle 5 isoform 1. (967 aa)
TCM_032152U4/U6.U5 tri-snRNP-associated protein 1 isoform 1. (907 aa)
TCM_032899Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1279 aa)
TCM_032398PHF5-like protein. (110 aa)
TCM_030526Transducin/WD40 repeat-like superfamily protein. (313 aa)
TCM_030592RNA-binding family protein. (348 aa)
TCM_034192Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1. (1185 aa)
TCM_034385Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
TCM_034659Pre-mRNA-processing protein 40A isoform 3. (1041 aa)
TCM_033734RNA-binding family protein, putative isoform 1. (262 aa)
TCM_036535Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1168 aa)
TCM_042977Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1. (1214 aa)
TCM_043024RNA-binding family protein with retrovirus zinc finger-like domain isoform 1. (304 aa)
TCM_043010Pre-mRNA-splicing factor 3 isoform 1. (762 aa)
TCM_042785Heat shock cognate protein 70-1; Belongs to the heat shock protein 70 family. (652 aa)
TCM_043209Cwf18 isoform 1. (151 aa)
TCM_043324RNA-binding family protein with retrovirus zinc finger-like domain isoform 1. (276 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_044779Nuclear matrix protein-related isoform 1. (602 aa)
TCM_045023Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (248 aa)
TCM_042754P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (1167 aa)
TCM_042793Heat shock protein 70; Belongs to the heat shock protein 70 family. (649 aa)
TCM_012168P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family. (626 aa)
TCM_043735U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
TCM_014265Glycine-rich RNA-binding protein 3. (383 aa)
TCM_014166RNA helicase family protein isoform 2. (1055 aa)
TCM_045030U5 small nuclear ribonucleoprotein helicase, putative isoform 1. (2176 aa)
TCM_015504SER/ARG-rich protein 34A; Belongs to the eukaryotic ribosomal protein P1/P2 family. (424 aa)
TCM_015872G10 family protein. (145 aa)
TCM_016294RNA-binding family protein. (200 aa)
TCM_016407Crooked neck protein / cell cycle protein, putative isoform 1. (701 aa)
TCM_026902D111/G-patch domain-containing protein. (382 aa)
TCM_026981Small nuclear ribonucleoprotein associated protein B. (291 aa)
TCM_027096Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (114 aa)
TCM_027151DEAD/DEAH box RNA helicase family protein isoform 1. (427 aa)
TCM_026952Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
TCM_015090Arginine/serine-rich splicing factor 35. (372 aa)
TCM_027148Modifier of snc1,4 isoform 1. (253 aa)
TCM_015383Splicing factor-related. (509 aa)
TCM_029008DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family. (505 aa)
TCM_027427PRP38 family protein isoform 1. (380 aa)
TCM_029917Proline-rich spliceosome-associated family protein isoform 1. (606 aa)
TCM_030360Ubiquitin C-terminal hydrolases superfamily protein. (557 aa)
TCM_036891RNA recognition motif-containing protein isoform 1. (985 aa)
TCM_036839Serine/arginine-rich 22 isoform 1. (181 aa)
TCM_038062Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
TCM_029973Tetratricopeptide repeat-like superfamily protein. (1041 aa)
TCM_038810Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
TCM_038404Heat shock protein 70B; Belongs to the heat shock protein 70 family. (650 aa)
TCM_039191U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform 1. (211 aa)
TCM_040038SC35-like splicing factor 33. (269 aa)
TCM_040897RNA-binding (RRM/RBD/RNP motifs) family protein. (124 aa)
TCM_040864RNA-binding family protein. (199 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
TCM_041484G10 family protein isoform 1. (145 aa)
TCM_041518Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1. (318 aa)
TCM_041599PHF5-like protein. (110 aa)
TCM_041862Heat shock cognate protein 70-1; Belongs to the heat shock protein 70 family. (677 aa)
TCM_039217Small nuclear ribonucleoprotein F. (88 aa)
TCM_039496Transducin/WD40 repeat-like superfamily protein. (627 aa)
TCM_041519Zinc finger C-x8-C-x5-C-x3-H type family protein. (315 aa)
TCM_041868Heat shock cognate protein 70-1; Belongs to the heat shock protein 70 family. (650 aa)
TCM_041883RNA-binding family protein. (241 aa)
TCM_042032RNA-binding family protein, putative isoform 1. (500 aa)
TCM_042209TBP-associated factor 15B isoform 1. (468 aa)
TCM_042243U2 small nuclear ribonucleoprotein B. (232 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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