STRINGSTRING
Pnap_0135 Pnap_0135 Pnap_0136 Pnap_0136 Pnap_0137 Pnap_0137 Pnap_0139 Pnap_0139 Pnap_0140 Pnap_0140 Pnap_0599 Pnap_0599 Pnap_0600 Pnap_0600 Pnap_0601 Pnap_0601 Pnap_0612 Pnap_0612 Pnap_0613 Pnap_0613 Pnap_0614 Pnap_0614 Pnap_0615 Pnap_0615 Pnap_0616 Pnap_0616 Pnap_0617 Pnap_0617 Pnap_0618 Pnap_0618 Pnap_1548 Pnap_1548 Pnap_1560 Pnap_1560 Pnap_1656 Pnap_1656 Pnap_1658 Pnap_1658 Pnap_1697 Pnap_1697 Pnap_2025 Pnap_2025 Pnap_2026 Pnap_2026 Pnap_2027 Pnap_2027 Pnap_2028 Pnap_2028 Pnap_2029 Pnap_2029 Pnap_2030 Pnap_2030 Pnap_2031 Pnap_2031 Pnap_2032 Pnap_2032 Pnap_2033 Pnap_2033 Pnap_2165 Pnap_2165 Pnap_2474 Pnap_2474 Pnap_2702 Pnap_2702 Pnap_2703 Pnap_2703 Pnap_2704 Pnap_2704 Pnap_2705 Pnap_2705 Pnap_2706 Pnap_2706 Pnap_2707 Pnap_2707 Pnap_2708 Pnap_2708 Pnap_2709 Pnap_2709 Pnap_2710 Pnap_2710 Pnap_2711 Pnap_2711 Pnap_2712 Pnap_2712 Pnap_2718 Pnap_2718 Pnap_2733 Pnap_2733 Pnap_2734 Pnap_2734 Pnap_3733 Pnap_3733 Pnap_3805 Pnap_3805 Pnap_4079 Pnap_4079
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pnap_0135Ketopantoate reductase; KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein. (324 aa)
Pnap_0136PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal. (355 aa)
Pnap_0137PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pol:Bpro_0199 5-carboxymethyl-2-hydroxymuconate isomerase. (145 aa)
Pnap_0139PFAM: metallophosphoesterase; KEGG: pol:Bpro_0201 metallophosphoesterase. (260 aa)
Pnap_0140KEGG: pol:Bpro_0202 hypothetical protein. (134 aa)
Pnap_0599PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0660 hypothetical protein. (325 aa)
Pnap_0600PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03175 putative transferase protein. (212 aa)
Pnap_0601PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding. (288 aa)
Pnap_0612KEGG: bmb:BruAb2_1109 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, hypothetical; TC 3.A.1.4.-. (400 aa)
Pnap_0613TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB. (411 aa)
Pnap_0614PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase. (274 aa)
Pnap_0615PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR. (261 aa)
Pnap_06163-hydroxyphenylpropionate hydroxylase; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_B5808 monooxygenase, FAD-binding:FAD dependent oxidoreductase. (580 aa)
Pnap_0617PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065. (341 aa)
Pnap_06185-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein. (282 aa)
Pnap_1548PFAM: amidohydrolase 2; KEGG: bja:blr2258 putative 2-pyrone-4,6-dicarbaxylate hydrolase. (276 aa)
Pnap_15604-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase. (632 aa)
Pnap_1656PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1854 xylose isomerase-like TIM barrel. (297 aa)
Pnap_1658PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_4498 oxidoreductase-like. (367 aa)
Pnap_1697PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase. (238 aa)
Pnap_2025PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase. (334 aa)
Pnap_20264-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like. (320 aa)
Pnap_2027Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0330 protocatechuate 4,5-dioxygenase. (305 aa)
Pnap_2028Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0331 protocatechuate 4,5-dioxygenase. (150 aa)
Pnap_2029PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2. (312 aa)
Pnap_2030PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065. (332 aa)
Pnap_20314-carboxy-4-hydroxy-2-oxoadipate aldolase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase. (229 aa)
Pnap_20324-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2. (342 aa)
Pnap_2033Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453. (389 aa)
Pnap_2165PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding. (299 aa)
Pnap_24745-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA5616 probable maleylpyruvate isomerase. (289 aa)
Pnap_2702PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein. (275 aa)
Pnap_2703PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein. (208 aa)
Pnap_2704PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:bll3658 hypothetical protein. (582 aa)
Pnap_2705PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein. (284 aa)
Pnap_2706PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase. (264 aa)
Pnap_2707PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:bll3659 putative dehydrogenase. (580 aa)
Pnap_2708Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: rme:Rmet_4017 transcriptional regulator, AraC family. (317 aa)
Pnap_2709PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase. (276 aa)
Pnap_2710PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rme:Rmet_5492 fumarate reductase/succinate dehydrogenase flavoprotein-like protein. (568 aa)
Pnap_2711PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein. (116 aa)
Pnap_2712PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mlr5879 short chain dehydrogenase. (286 aa)
Pnap_2718PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sit:TM1040_3469 5-carboxymethyl-2-hydroxymuconate isomerase. (137 aa)
Pnap_2733Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0294 protocatechuate 4,5-dioxygenase. (282 aa)
Pnap_2734Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0295 extradiol ring-cleavage dioxygenase LigAB, LigA subunit. (121 aa)
Pnap_3733TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_4532 4-oxalocrotonate tautomerase family enzyme. (63 aa)
Pnap_3805Methylitaconate delta2-delta3-isomerase; PFAM: Uncharacterized protein UPF0065; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453. (707 aa)
Pnap_4079PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein. (266 aa)
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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