STRINGSTRING
ppcK ppcK Rta_02350 Rta_02350 Rta_02380 Rta_02380 ctaD ctaD ctaC ctaC Rta_06270 Rta_06270 petA petA petB petB petC petC Rta_12730 Rta_12730 Rta_13220 Rta_13220 Rta_13230 Rta_13230 Rta_13240 Rta_13240 Rta_13250 Rta_13250 fumA fumA fumC fumC Rta_16140 Rta_16140 Rta_18430 Rta_18430 Rta_19360 Rta_19360 icdA icdA Rta_25130 Rta_25130 Rta_25140 Rta_25140 Rta_25150 Rta_25150 sdhB sdhB nuoN nuoN nuoM nuoM nuoL nuoL nuoK nuoK nuoJ nuoJ nuoI nuoI nuoH nuoH nuoG nuoG nuoF nuoF nuoE nuoE nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA Rta_26750 Rta_26750 acnA acnA acnB acnB mdh mdh Rta_28080 Rta_28080 Rta_28090 Rta_28090 sdhA sdhA sdhB-2 sdhB-2 gltA gltA ppc ppc Rta_30460 Rta_30460 Rta_30480 Rta_30480 fdhB fdhB fdhF fdhF Rta_30550 Rta_30550 Rta_30560 Rta_30560 Rta_30570 Rta_30570 Rta_30580 Rta_30580 Rta_30590 Rta_30590 Rta_30600 Rta_30600 Rta_33320 Rta_33320 Rta_33500 Rta_33500 Rta_33510 Rta_33510 ctaE ctaE ctaD-2 ctaD-2 ctaC-2 ctaC-2 Rta_35500 Rta_35500 Rta_35510 Rta_35510 Rta_35520 Rta_35520 tctC-64 tctC-64 Rta_35540 Rta_35540 sucD sucD sucC sucC Rta_37850 Rta_37850
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppcKCandidate Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (617 aa)
Rta_02350Candidate Esterase/lipase. (285 aa)
Rta_02380Hypothetical protein. (336 aa)
ctaDCandidate Cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1). (860 aa)
ctaCCandidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2). (276 aa)
Rta_06270Candidate Cytochrome c-type protein. (328 aa)
petACandidate Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (198 aa)
petBCandidate cytochrome b, membrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (471 aa)
petCCandidate Cytochrome c1 precursor. (256 aa)
Rta_12730Conserved hypothetical protein. (283 aa)
Rta_13220Transcriptional regulator, LysR family-like protein. (368 aa)
Rta_13230Candidate ABC transporter probably involved in tungstate transport, permease component. (245 aa)
Rta_13240Candidate ABC transporter probably involved in tungstate transport, ATP-binding component; Belongs to the ABC transporter superfamily. (233 aa)
Rta_13250Candidate ABC transporter probably involved in tungstate transport, periplasmic component. (278 aa)
fumACandidate fumarate hydratase class I (Fumarase); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (517 aa)
fumCCandidate fumarate hydratase class II (Fumarase C); Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (459 aa)
Rta_16140Conserved hypothetical protein. (500 aa)
Rta_18430Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase)-like protein. (426 aa)
Rta_19360Rieske-I iron sulfur protein-like protein. (245 aa)
icdACandidate isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase). (417 aa)
Rta_25130Transcriptional regulator, MarR family-like protein; Belongs to the GbsR family. (192 aa)
Rta_25140Cytochrome d ubiquinol oxidase subunit I-like protein. (475 aa)
Rta_25150Cytochrome bd-II oxidase subunit II-like protein. (348 aa)
sdhBCandidate succinate dehydrogenase iron-sulfur protein. (234 aa)
nuoNCandidate NADH:ubiquinone oxidoreductase subunit 14 or 2, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (495 aa)
nuoMCandidate NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M. (491 aa)
nuoLCandidate NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L. (685 aa)
nuoKCandidate NADH:ubiquinone oxidoreductase subunit 11 or 4L, chain K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
nuoJCandidate NADH:ubiquinone oxidoreductase subunit 10 or 6, chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (218 aa)
nuoICandidate NADH:ubiquinone oxidoreductase subunit 9 or 23 kDa subunit, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (172 aa)
nuoHCandidate NADH:ubiquinone oxidoreductase subunit 8 or 1, chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (360 aa)
nuoGCandidate NADH:ubiquinone oxidoreductase subunit 3 or 75 kDa subunit, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (702 aa)
nuoFCandidate NADH:ubiquinone oxidoreductase subunit 1 or 51 kDa subunit, chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (455 aa)
nuoECandidate NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit, chain E. (162 aa)
nuoDCandidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
nuoCCandidate NADH:ubiquinone oxidoreductase subunit 5 or 30 kDa subunit, chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (212 aa)
nuoBCandidate NADH:ubiquinone oxidoreductase subunit 6 or 20 kDa subunit, chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (159 aa)
nuoACandidate NADH:ubiquinone oxidoreductase subunit 7 or 3, chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (123 aa)
Rta_26750Isoflavone reductase (NADPH:isoflavone oxidoreductase)-like protein. (294 aa)
acnACandidate aconitase (aconitate hydratase). (952 aa)
acnBAconitase 2; Belongs to the aconitase/IPM isomerase family. (861 aa)
mdhCandidate malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (328 aa)
Rta_28080Succinate dehydrogenase cytochrome b-556 subunit-like protein. (148 aa)
Rta_28090Succinate dehydrogenase hydrophobic membrane anchor protein-like protein. (121 aa)
sdhACandidate succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (602 aa)
sdhB-2Candidate succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (234 aa)
gltACandidate citrate synthase; Belongs to the citrate synthase family. (436 aa)
ppcCandidate phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (951 aa)
Rta_30460Formate dehydrogenase subunit D-like protein. (267 aa)
Rta_30480Candidate formate dehydrogenase subunit C precursor. (406 aa)
fdhBCandidate formate dehydrogenase iron-sulfur subunit. (205 aa)
fdhFCandidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (990 aa)
Rta_30550Conserved hypothetical protein. (206 aa)
Rta_30560Conserved hypothetical protein. (679 aa)
Rta_30570Conserved hypothetical protein. (209 aa)
Rta_30580Conserved hypothetical protein. (190 aa)
Rta_30590Formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (944 aa)
Rta_30600Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein. (569 aa)
Rta_33320Ferredoxin-like protein. (100 aa)
Rta_33500Zinc protease protein-like protein. (457 aa)
Rta_33510Zinc protease protein-like protein; Belongs to the peptidase M16 family. (472 aa)
ctaEOxidase AA(3) subunit 3; membrane protein. (293 aa)
ctaD-2Candidate cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1); Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (568 aa)
ctaC-2Candidate cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (387 aa)
Rta_35500Fumarate reductase flavoprotein subunit precursor (Iron(III)-induced flavocytochrome C3)-like protein. (441 aa)
Rta_35510Candidate citrate utilization protein B. (382 aa)
Rta_35520Conserved hypothetical protein. (260 aa)
tctC-64Candidate extracytoplasmic binding receptor. (324 aa)
Rta_35540D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein. (346 aa)
sucDCandidate succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa)
sucCCandidate succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (388 aa)
Rta_37850Bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein; Belongs to the malic enzymes family. (771 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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