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Rta_00980 Rta_00980 gcdH gcdH Rta_05640 Rta_05640 Rta_05680 Rta_05680 Rta_05720 Rta_05720 Rta_06630 Rta_06630 Rta_06670 Rta_06670 Rta_09140 Rta_09140 fadA fadA tctC-21 tctC-21 Rta_14100 Rta_14100 Rta_14260 Rta_14260 Rta_14720 Rta_14720 Rta_14810 Rta_14810 Rta_14820 Rta_14820 Rta_17330 Rta_17330 Rta_18100 Rta_18100 Rta_18160 Rta_18160 gcdH-2 gcdH-2 Rta_20040 Rta_20040 Rta_20050 Rta_20050 alkK alkK Rta_21710 Rta_21710 Rta_22040 Rta_22040 Rta_22050 Rta_22050 Rta_22070 Rta_22070 Rta_22080 Rta_22080 Rta_25000 Rta_25000 Rta_25170 Rta_25170 Rta_25180 Rta_25180 Rta_25190 Rta_25190 Rta_31740 Rta_31740 Rta_31750 Rta_31750 Rta_31760 Rta_31760 Rta_33870 Rta_33870 Rta_33880 Rta_33880 pcaJ pcaJ pcaI pcaI Rta_33910 Rta_33910 Rta_33920 Rta_33920 Rta_34360 Rta_34360 Rta_34370 Rta_34370 Rta_36460 Rta_36460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rta_00980Candidate acetoacetate--CoA ligase (Acetoacetyl-CoA synthetase). (701 aa)
gcdHCandidate glutaryl-CoA dehydrogenase. (396 aa)
Rta_05640Candidate Isovaleryl-CoA dehydrogenase. (392 aa)
Rta_05680Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Rta_05720Unsaturated acyl-CoA reductaseButyryl dehydrogenase. (375 aa)
Rta_06630Unsaturated acyl-CoA hydratase. (261 aa)
Rta_06670Candidate Hydroxymethylglutaryl-CoA lyase. (306 aa)
Rta_09140Unsaturated acyl-CoA hydratase. (828 aa)
fadA3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
tctC-21Candidate extracytoplasmic binding receptor. (325 aa)
Rta_14100Unsaturated acyl-CoA hydratase. (264 aa)
Rta_14260hydroxymethylglutaryl-CoA lyase (3-hydroxy-3-methylglutarate-CoA lyase)-like protein. (312 aa)
Rta_14720Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (567 aa)
Rta_14810Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl CoA:3-oxoacid CoA-transferase). (232 aa)
Rta_14820Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase). (211 aa)
Rta_17330Candidate D-beta-hydroxybutyrate dehydrogenase (BDH); (3-hydroxybutyrate dehydrogenase) (3-HBDH); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
Rta_18100Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Rta_18160Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase). (389 aa)
gcdH-2Candidate glutaryl-CoA dehydrogenase. (392 aa)
Rta_200403-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Rta_200503-hydroxybutyryl-CoA epimerase-like protein. (700 aa)
alkKCandidate medium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase). (542 aa)
Rta_21710hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein; (HL) (3- hydroxy-3-methylglutarate-CoA lyase). (305 aa)
Rta_220403-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein. (491 aa)
Rta_22050Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
Rta_22070Conserved hypothetical protein. (366 aa)
Rta_22080Acyl dehydrogenase. (424 aa)
Rta_25000Unsaturated acyl-CoA hydratase. (278 aa)
Rta_25170Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase). (596 aa)
Rta_25180Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit). (310 aa)
Rta_25190Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit). (249 aa)
Rta_31740acyl-CoA dehydrogenase-like protein. (393 aa)
Rta_31750Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase). (371 aa)
Rta_31760Conserved hypothetical protein. (457 aa)
Rta_33870Hypothetical protein. (71 aa)
Rta_33880Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
pcaJCandidate 3-oxoadipate CoA-transferase subunit B (Beta- ketoadipate:succinyl-CoA transferase subunit B). (214 aa)
pcaICandidate 3-oxoadipate CoA-transferase subunit A (Beta- ketoadipate:succinyl-CoA transferase subunit A). (234 aa)
Rta_33910Candidate permease, fused integral membrane protein. (677 aa)
Rta_33920Candidate periplasmic component. (319 aa)
Rta_34360Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (267 aa)
Rta_34370Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
Rta_36460Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (264 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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