(15 nodes) Fatty acid degradation network (Ramlibacter tataouinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	gcdH	Candidate glutaryl-CoA dehydrogenase. (396 aa)
	Rta_05640	Candidate Isovaleryl-CoA dehydrogenase. (392 aa)
	Rta_05680	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	Rta_05720	Unsaturated acyl-CoA reductaseButyryl dehydrogenase. (375 aa)
	Rta_09140	Unsaturated acyl-CoA hydratase. (828 aa)
	fadA	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	Rta_18100	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	Rta_18160	Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase). (389 aa)
	gcdH-2	Candidate glutaryl-CoA dehydrogenase. (392 aa)
	Rta_20040	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	Rta_20050	3-hydroxybutyryl-CoA epimerase-like protein. (700 aa)
	Rta_22040	3-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein. (491 aa)
	Rta_34360	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (267 aa)
	Rta_34370	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	Rta_36460	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (264 aa)

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_05640	Rta_05680	Rta_05640	Rta_05680	Candidate Isovaleryl-CoA dehydrogenase.	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.700
Rta_05640	Rta_05720	Rta_05640	Rta_05720	Candidate Isovaleryl-CoA dehydrogenase.	Unsaturated acyl-CoA reductaseButyryl dehydrogenase.	0.502
Rta_05640	Rta_09140	Rta_05640	Rta_09140	Candidate Isovaleryl-CoA dehydrogenase.	Unsaturated acyl-CoA hydratase.	0.760
Rta_05640	Rta_20050	Rta_05640	Rta_20050	Candidate Isovaleryl-CoA dehydrogenase.	3-hydroxybutyryl-CoA epimerase-like protein.	0.760
Rta_05640	Rta_22040	Rta_05640	Rta_22040	Candidate Isovaleryl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein.	0.566
Rta_05640	Rta_34360	Rta_05640	Rta_34360	Candidate Isovaleryl-CoA dehydrogenase.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.488
Rta_05640	Rta_34370	Rta_05640	Rta_34370	Candidate Isovaleryl-CoA dehydrogenase.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.948
Rta_05640	Rta_36460	Rta_05640	Rta_36460	Candidate Isovaleryl-CoA dehydrogenase.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.939
Rta_05680	Rta_05640	Rta_05680	Rta_05640	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Candidate Isovaleryl-CoA dehydrogenase.	0.700
Rta_05680	Rta_05720	Rta_05680	Rta_05720	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Unsaturated acyl-CoA reductaseButyryl dehydrogenase.	0.972
Rta_05680	Rta_09140	Rta_05680	Rta_09140	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Unsaturated acyl-CoA hydratase.	0.998
Rta_05680	Rta_18100	Rta_05680	Rta_18100	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.907
Rta_05680	Rta_18160	Rta_05680	Rta_18160	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase).	0.936
Rta_05680	Rta_20040	Rta_05680	Rta_20040	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.916
Rta_05680	Rta_20050	Rta_05680	Rta_20050	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA epimerase-like protein.	0.998
Rta_05680	Rta_22040	Rta_05680	Rta_22040	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein.	0.979
Rta_05680	Rta_34360	Rta_05680	Rta_34360	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.606
Rta_05680	Rta_34370	Rta_05680	Rta_34370	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.598
Rta_05680	Rta_36460	Rta_05680	Rta_36460	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.606
Rta_05680	fadA	Rta_05680	Rta_09150	Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.918

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