(28 nodes) Secretion, and Type II/IV secretion system protein network (Ramlibacter tataouinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	gspD	Candidate secretin, general secretion pathway protein D. (668 aa)
	gspH	Candidate pseudopilin, general secretion pathway protein H precursor. (114 aa)
	Rta_12575	Pseudopilin, general secretion pathway protein G precursor-like protein. (164 aa)
	Rta_12576	Conserved hypothetical protein. (156 aa)
	Rta_12580	Hypothetical protein. (132 aa)
	gspE	Candidate general secretion pathway protein E (Type II traffic warden ATPase). (480 aa)
	gspF	Candidate general secretion pathway protein F. (412 aa)
	gspG	Candidate pseudopilin, general secretion pathway protein G precursor. (150 aa)
	pilB	Candidate type 4 fimbrial assembly protein pilB, putative traffic ATPase. (581 aa)
	pilC	Candidate type 4 fimbrial assembly protein pilC, gspF family. (405 aa)
	pilD	Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (280 aa)
	coaE	Candidate dephospho-CoA kinase (Dephosphocoenzyme A kinase); Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (199 aa)
	zapD	Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. (251 aa)
	Rta_29190	Conserved hypothetical protein. (48 aa)
	Rta_29930	Type III secretion outer membrane protein PscC-like protein. (606 aa)
	Rta_31940	Type IV pilus assembly protein tapB-like protein. (597 aa)
	gspF-2	Candidate general secretion pathway protein F, component of type II secretion system. (391 aa)
	Rta_35320	Conserved hypothetical protein. (173 aa)
	gspG-2	Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system. (146 aa)
	gspH-2	Candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system. (150 aa)
	gspI	Candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system. (121 aa)
	gspJ	Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system. (244 aa)
	gspK	Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system. (330 aa)
	gspL	Candidate general secretion pathway protein L, component of type II secretion system. (401 aa)
	gspM	Candidate general secretion pathway protein M, component of type II secretion system. (169 aa)
	gspC	Candidate general secretion pathway protein C, component of type II secretion system. (267 aa)
	gspD-2	Candidate secretin, general secretion pathway protein D, component of type II secretion system. (735 aa)
	gspE-2	Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system. (463 aa)

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_12575	Rta_12576	Rta_12575	Rta_12576	Pseudopilin, general secretion pathway protein G precursor-like protein.	Conserved hypothetical protein.	0.951
Rta_12575	Rta_12580	Rta_12575	Rta_12580	Pseudopilin, general secretion pathway protein G precursor-like protein.	Hypothetical protein.	0.784
Rta_12575	Rta_31940	Rta_12575	Rta_31940	Pseudopilin, general secretion pathway protein G precursor-like protein.	Type IV pilus assembly protein tapB-like protein.	0.476
Rta_12575	gspD	Rta_12575	Rta_12560	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate secretin, general secretion pathway protein D.	0.917
Rta_12575	gspE	Rta_12575	Rta_12600	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate general secretion pathway protein E (Type II traffic warden ATPase).	0.583
Rta_12575	gspE-2	Rta_12575	Rta_35420	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system.	0.476
Rta_12575	gspF	Rta_12575	Rta_12610	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate general secretion pathway protein F.	0.570
Rta_12575	gspF-2	Rta_12575	Rta_35060	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate general secretion pathway protein F, component of type II secretion system.	0.496
Rta_12575	gspH	Rta_12575	Rta_12570	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate pseudopilin, general secretion pathway protein H precursor.	0.947
Rta_12575	gspJ	Rta_12575	Rta_35360	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.	0.582
Rta_12575	gspK	Rta_12575	Rta_35370	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system.	0.530
Rta_12575	pilB	Rta_12575	Rta_29140	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate type 4 fimbrial assembly protein pilB, putative traffic ATPase.	0.476
Rta_12575	pilC	Rta_12575	Rta_29150	Pseudopilin, general secretion pathway protein G precursor-like protein.	Candidate type 4 fimbrial assembly protein pilC, gspF family.	0.496
Rta_12576	Rta_12575	Rta_12576	Rta_12575	Conserved hypothetical protein.	Pseudopilin, general secretion pathway protein G precursor-like protein.	0.951
Rta_12576	Rta_12580	Rta_12576	Rta_12580	Conserved hypothetical protein.	Hypothetical protein.	0.793
Rta_12576	Rta_31940	Rta_12576	Rta_31940	Conserved hypothetical protein.	Type IV pilus assembly protein tapB-like protein.	0.475
Rta_12576	gspD	Rta_12576	Rta_12560	Conserved hypothetical protein.	Candidate secretin, general secretion pathway protein D.	0.916
Rta_12576	gspE	Rta_12576	Rta_12600	Conserved hypothetical protein.	Candidate general secretion pathway protein E (Type II traffic warden ATPase).	0.552
Rta_12576	gspE-2	Rta_12576	Rta_35420	Conserved hypothetical protein.	Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system.	0.475
Rta_12576	gspF	Rta_12576	Rta_12610	Conserved hypothetical protein.	Candidate general secretion pathway protein F.	0.557

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