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Rta_29930 Rta_29930 Rta_35320 Rta_35320 gspG-2 gspG-2 gspH-2 gspH-2 gspI gspI gspJ gspJ gspK gspK gspL gspL gspM gspM gspC gspC gspD-2 gspD-2 gspE-2 gspE-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rta_29930Type III secretion outer membrane protein PscC-like protein. (606 aa)
Rta_35320Conserved hypothetical protein. (173 aa)
gspG-2Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system. (146 aa)
gspH-2Candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system. (150 aa)
gspICandidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system. (121 aa)
gspJCandidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system. (244 aa)
gspKCandidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system. (330 aa)
gspLCandidate general secretion pathway protein L, component of type II secretion system. (401 aa)
gspMCandidate general secretion pathway protein M, component of type II secretion system. (169 aa)
gspCCandidate general secretion pathway protein C, component of type II secretion system. (267 aa)
gspD-2Candidate secretin, general secretion pathway protein D, component of type II secretion system. (735 aa)
gspE-2Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system. (463 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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