STRINGSTRING
gspD gspD gspH gspH Rta_12575 Rta_12575 Rta_12576 Rta_12576 Rta_12580 Rta_12580 gspE gspE gspF gspF gspG gspG Rta_31940 Rta_31940 gspF-2 gspF-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gspDCandidate secretin, general secretion pathway protein D. (668 aa)
gspHCandidate pseudopilin, general secretion pathway protein H precursor. (114 aa)
Rta_12575Pseudopilin, general secretion pathway protein G precursor-like protein. (164 aa)
Rta_12576Conserved hypothetical protein. (156 aa)
Rta_12580Hypothetical protein. (132 aa)
gspECandidate general secretion pathway protein E (Type II traffic warden ATPase). (480 aa)
gspFCandidate general secretion pathway protein F. (412 aa)
gspGCandidate pseudopilin, general secretion pathway protein G precursor. (150 aa)
Rta_31940Type IV pilus assembly protein tapB-like protein. (597 aa)
gspF-2Candidate general secretion pathway protein F, component of type II secretion system. (391 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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