(28 nodes) Mixed, incl. Nitrogen metabolism, and SsuA/THI5-like network (Ramlibacter tataouinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rta_00210	Taurine dioxygenase-like protein. (274 aa)
	Rta_20970	3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (255 aa)
	Rta_25160	2-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein. (319 aa)
	Rta_26560	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein. (201 aa)
	Rta_26570	Candidate ABC transporter probably involved in nitrate transport, periplasmic component. (428 aa)
	Rta_26580	Candidate ABC transporter probably involved in nitrate transport, permease component. (252 aa)
	Rta_26590	Candidate ABC transporter probably involved in nitrate transport, ATP-binding component. (271 aa)
	Rta_26600	Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (827 aa)
	Rta_26620	Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein. (127 aa)
	Rta_26630	Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (946 aa)
	Rta_27200	Bifunctional protein (MocR family) : transcriptional regulator, GntR family; aspartate transaminase-like protein. (488 aa)
	Rta_27210	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component. (259 aa)
	Rta_27220	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component. (259 aa)
	Rta_27230	N-acyl-D-glutamate deacylase (N-acyl-D-glutamate amidohydrolase) and to D-aminoacylase (N-acyl-D-amino-acid deacylase)-like protein. (528 aa)
	Rta_27240	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component. (265 aa)
	Rta_27250	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (353 aa)
	Rta_27260	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (350 aa)
	Rta_27280	Polymyxin resistance protein pmrH; Belongs to the DegT/DnrJ/EryC1 family. (397 aa)
	dcyD	Candidate D-cysteine desulfhydrase. (338 aa)
	Rta_27300	Gluconate 5-dehydrogenase (5-keto-D-gluconate 5- reductase)-like protein. (256 aa)
	Rta_27310	Threonine dehydrogenase and related Zn-dependent dehydrogenase-like protein. (338 aa)
	Rta_27320	Candidate membrane protein. (334 aa)
	Rta_27340	Candidate membrane protein. (386 aa)
	Rta_32680	Candidate transglycosylase associated protein. (88 aa)
	Rta_32690	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (344 aa)
	Rta_32700	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component. (282 aa)
	Rta_32710	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component. (258 aa)
	Rta_32730	Conserved hypothetical protein. (160 aa)

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_00210	Rta_27210	Rta_00210	Rta_27210	Taurine dioxygenase-like protein.	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.	0.929
Rta_20970	Rta_27310	Rta_20970	Rta_27310	3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).	Threonine dehydrogenase and related Zn-dependent dehydrogenase-like protein.	0.900
Rta_25160	Rta_26600	Rta_25160	Rta_26600	2-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein.	Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.900
Rta_25160	Rta_26620	Rta_25160	Rta_26620	2-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein.	Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein.	0.900
Rta_25160	Rta_26630	Rta_25160	Rta_26630	2-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein.	Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.900
Rta_26560	Rta_26570	Rta_26560	Rta_26570	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	0.871
Rta_26560	Rta_26580	Rta_26560	Rta_26580	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Candidate ABC transporter probably involved in nitrate transport, permease component.	0.507
Rta_26560	Rta_26590	Rta_26560	Rta_26590	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Candidate ABC transporter probably involved in nitrate transport, ATP-binding component.	0.471
Rta_26560	Rta_26600	Rta_26560	Rta_26600	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.853
Rta_26560	Rta_26620	Rta_26560	Rta_26620	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein.	0.829
Rta_26560	Rta_26630	Rta_26560	Rta_26630	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.797
Rta_26570	Rta_26560	Rta_26570	Rta_26560	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.	0.871
Rta_26570	Rta_26580	Rta_26570	Rta_26580	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate ABC transporter probably involved in nitrate transport, permease component.	0.993
Rta_26570	Rta_26590	Rta_26570	Rta_26590	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate ABC transporter probably involved in nitrate transport, ATP-binding component.	0.996
Rta_26570	Rta_26600	Rta_26570	Rta_26600	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.844
Rta_26570	Rta_26620	Rta_26570	Rta_26620	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein.	0.771
Rta_26570	Rta_26630	Rta_26570	Rta_26630	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.982
Rta_26570	Rta_27210	Rta_26570	Rta_27210	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.	0.737
Rta_26570	Rta_27220	Rta_26570	Rta_27220	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.	0.748
Rta_26570	Rta_27240	Rta_26570	Rta_27240	Candidate ABC transporter probably involved in nitrate transport, periplasmic component.	Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.	0.806

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