STRINGSTRING
trmU trmU lipA lipA ttcA ttcA Rta_13050 Rta_13050 Rta_14810 Rta_14810 Rta_14820 Rta_14820 rimO rimO iscS iscS thiG thiG moaE moaE Rta_24380 Rta_24380 Rta_27410 Rta_27410 Rta_30460 Rta_30460 Rta_32020 Rta_32020 pcaJ pcaJ pcaI pcaI miaB miaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trmUCandidate tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (374 aa)
lipACandidate lipoic acid synthetase (Lipoate synthase); Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (327 aa)
ttcAConserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (309 aa)
Rta_130503-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein. (301 aa)
Rta_14810Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl CoA:3-oxoacid CoA-transferase). (232 aa)
Rta_14820Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase). (211 aa)
rimO2-methylthioadenine synthetase-like protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (468 aa)
iscSCandidate cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (408 aa)
thiGCandidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (259 aa)
moaE(Molybdopterin synthase subunit 2) (Molybdenum cofactor biosynthesis protein E) (Molybdopterin converting factor large subunit). (159 aa)
Rta_24380Lactoylglutathione lyase (Methylglyoxalase)-like protein; (Aldoketomutase) (Glyoxalase I). (142 aa)
Rta_27410PhnB protein-like protein. (141 aa)
Rta_30460Formate dehydrogenase subunit D-like protein. (267 aa)
Rta_32020Sulfurtransferases-like protein. (544 aa)
pcaJCandidate 3-oxoadipate CoA-transferase subunit B (Beta- ketoadipate:succinyl-CoA transferase subunit B). (214 aa)
pcaICandidate 3-oxoadipate CoA-transferase subunit A (Beta- ketoadipate:succinyl-CoA transferase subunit A). (234 aa)
miaB2-methylthioadenine synthetase-like protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (447 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.