STRINGSTRING
gspE-2 gspE-2 Rta_37350 Rta_37350 Rta_23820 Rta_23820 pilO pilO Rta_13580 Rta_13580 pilB pilB Rta_31940 Rta_31940 Rta_35320 Rta_35320 gspG-2 gspG-2 gspH-2 gspH-2 gspI gspI gspK gspK Rta_15240 Rta_15240 Rta_15290 Rta_15290 gspM gspM Rta_15300 Rta_15300 gspG gspG gspE gspE Rta_12300 Rta_12300 pilA pilA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gspE-2Candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system. (463 aa)
Rta_37350Bifunctional protein : sensor, GAF domain; type 4 fimbrial assembly protein pilB, general secretion pathway protein E-like protein. (800 aa)
Rta_23820General secretion pathway protein B-like protein. (225 aa)
pilOCandidate Tfp pilus assembly protein PilO. (221 aa)
Rta_13580Conserved hypothetical protein. (98 aa)
pilBCandidate type 4 fimbrial assembly protein pilB, putative traffic ATPase. (581 aa)
Rta_31940Type IV pilus assembly protein tapB-like protein. (597 aa)
Rta_35320Conserved hypothetical protein. (173 aa)
gspG-2Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system. (146 aa)
gspH-2Candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system. (150 aa)
gspICandidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system. (121 aa)
gspKCandidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system. (330 aa)
Rta_15240Type 4 fimbrial biogenesis protein PilE-like protein. (130 aa)
Rta_15290Type 4 fimbrial pilin-like protein. (186 aa)
gspMCandidate general secretion pathway protein M, component of type II secretion system. (169 aa)
Rta_15300Type 4 fimbrial pilin-like protein. (171 aa)
gspGCandidate pseudopilin, general secretion pathway protein G precursor. (150 aa)
gspECandidate general secretion pathway protein E (Type II traffic warden ATPase). (480 aa)
Rta_12300Conserved hypothetical protein. (165 aa)
pilACandidate type 4 fimbrial pilin protein. (147 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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