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Rta_35270 Rta_35270 Rta_34050 Rta_34050 Rta_34490 Rta_34490 Rta_34590 Rta_34590 Rta_35110 Rta_35110 Rta_37100 Rta_37100 Rta_35130 Rta_35130 Rta_02000 Rta_02000 Rta_02820 Rta_02820 Rta_03040 Rta_03040 Rta_03540 Rta_03540 atpB atpB atpE atpE atpF atpF atpH atpH atpA atpA atpG atpG atpD atpD atpC atpC Rta_03920 Rta_03920 Rta_04000 Rta_04000 Rta_04510 Rta_04510 Rta_05180 Rta_05180 Rta_05190 Rta_05190 Rta_05480 Rta_05480 trkA trkA Rta_06160 Rta_06160 Rta_06540 Rta_06540 tatA tatA tatB tatB tatC tatC petB petB Rta_09380 Rta_09380 Rta_10780 Rta_10780 Rta_10790 Rta_10790 Rta_11010 Rta_11010 Rta_11070 Rta_11070 Rta_11080 Rta_11080 Rta_11920 Rta_11920 Rta_12080 Rta_12080 Rta_13500 Rta_13500 Rta_15750 Rta_15750 afuC afuC Rta_16350 Rta_16350 Rta_16500 Rta_16500 Rta_16530 Rta_16530 Rta_17850 Rta_17850 Rta_17970 Rta_17970 Rta_18430 Rta_18430 Rta_19400 Rta_19400 Rta_19410 Rta_19410 Rta_37110 Rta_37110 cysA cysA Rta_20490 Rta_20490 Rta_20570 Rta_20570 Rta_21300 Rta_21300 Rta_22060 Rta_22060 Rta_22530 Rta_22530 Rta_23200 Rta_23200 Rta_23340 Rta_23340 sdhB sdhB osmB osmB Rta_26090 Rta_26090 Rta_26120 Rta_26120 nuoM nuoM nuoL nuoL nuoI nuoI nuoG nuoG nuoF nuoF nuoE nuoE nuoD nuoD Rta_35500 Rta_35500 nuoC nuoC Rta_27490 Rta_27490 atpE-2 atpE-2 folK folK Rta_28080 Rta_28080 sdhA sdhA sdhB-2 sdhB-2 argH argH Rta_29820 Rta_29820 Rta_30000 Rta_30000 Rta_36290 Rta_36290 Rta_30060 Rta_30060 Rta_30070 Rta_30070 ugpE ugpE Rta_31570 Rta_31570 Rta_31660 Rta_31660 Rta_31770 Rta_31770 lolD lolD Rta_32050 Rta_32050 Rta_32370 Rta_32370 Rta_33320 Rta_33320 Rta_33540 Rta_33540 Rta_33550 Rta_33550 ctaD-2 ctaD-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rta_35270Candidate outer membrane porin protein, precursor. (373 aa)
Rta_34050Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily. (361 aa)
Rta_34490Hypothetical protein. (80 aa)
Rta_34590Candidate membrane protein. (250 aa)
Rta_35110Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (394 aa)
Rta_37100Candidate outer membrane channel. (482 aa)
Rta_35130Candidate outer membrane transporter. (484 aa)
Rta_02000Conserved hypothetical protein. (389 aa)
Rta_02820Candidate ATP-binding component of an ABC transporter, unknown function. (263 aa)
Rta_03040Signal transduction protein : sensor, cNMP-binding domain-like protein. (215 aa)
Rta_03540Conserved hypothetical protein. (108 aa)
atpBCandidate F-ATPase, A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. (305 aa)
atpECandidate F-ATPase, C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (82 aa)
atpFCandidate F-ATPase, B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (156 aa)
atpHCandidate F-ATPase, delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (176 aa)
atpACandidate F-ATPase, alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (517 aa)
atpGCandidate F-ATPase, gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (294 aa)
atpDCandidate F-ATPase, beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (469 aa)
atpCCandidate F-ATPase, epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. (142 aa)
Rta_03920Candidate ABC transporter, ATP-binding component, uncharacterized transport function. (211 aa)
Rta_04000NADH dehydrogenase-like protein. (366 aa)
Rta_04510Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component. (297 aa)
Rta_05180Candidate ABC type amino acid transport system, permease component. (223 aa)
Rta_05190Candidate ABC type amino acid transport system, permease component. (217 aa)
Rta_05480Transcriptional regulator, CRP family-like protein. (219 aa)
trkACandidate NAD binding component of K+ transport system. (464 aa)
Rta_06160Candidate ultisubunit Na+/H+ antiporter, MnhE subunit. (163 aa)
Rta_06540Hypothetical protein. (175 aa)
tatACandidate Sec independent protein secretion pathway, components TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (80 aa)
tatBCandidate Sec independent protein secretion pathway, components TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (154 aa)
tatCCandidate Sec independent protein secretion pathway, components TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (262 aa)
petBCandidate cytochrome b, membrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (471 aa)
Rta_09380Candidate ABC type amino acid transport system, permease component. (239 aa)
Rta_10780Hypothetical protein. (392 aa)
Rta_10790Polysaccharide export protein-like protein. (283 aa)
Rta_11010Outer membrane protein-like protein. (449 aa)
Rta_11070Candidate ABC transporter, ATP-binding component. (222 aa)
Rta_11080Candidate ABC transporter, permease component. (400 aa)
Rta_11920NADH dehydrogenase-like protein. (450 aa)
Rta_12080Candidate membrane protein. (149 aa)
Rta_13500Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (399 aa)
Rta_15750Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)
afuCCandidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily. (354 aa)
Rta_16350Outer membrane cobalamin receptor protein-like protein. (612 aa)
Rta_16500Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (435 aa)
Rta_16530Outer membrane protein-like protein. (479 aa)
Rta_17850Adenylyl cyclase. (296 aa)
Rta_17970Conserved hypothetical protein. (223 aa)
Rta_18430Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase)-like protein. (426 aa)
Rta_19400Candidate membrane protein. (366 aa)
Rta_19410Candidate permease. (378 aa)
Rta_37110Periplasmic linker protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (378 aa)
cysACandidate ABC type sulfate/molybdate transport systems, ATP-binding component; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (372 aa)
Rta_20490Candidate ABC type sulfate transport systems, permease component. (297 aa)
Rta_20570Hypothetical protein. (118 aa)
Rta_21300Candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains. (506 aa)
Rta_22060Transcriptional regulator, CRP family-like protein. (242 aa)
Rta_22530Candidate ABC type phosphonate transport systems, permease component. (268 aa)
Rta_23200Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (412 aa)
Rta_23340Conserved hypothetical protein. (351 aa)
sdhBCandidate succinate dehydrogenase iron-sulfur protein. (234 aa)
osmBCandidate osmotically inducible lipoprotein B precursor. (72 aa)
Rta_26090Candidate ABC type antimicrobial peptide transport system, ATP-binding component. (226 aa)
Rta_26120Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains. (845 aa)
nuoMCandidate NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M. (491 aa)
nuoLCandidate NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L. (685 aa)
nuoICandidate NADH:ubiquinone oxidoreductase subunit 9 or 23 kDa subunit, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (172 aa)
nuoGCandidate NADH:ubiquinone oxidoreductase subunit 3 or 75 kDa subunit, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (702 aa)
nuoFCandidate NADH:ubiquinone oxidoreductase subunit 1 or 51 kDa subunit, chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (455 aa)
nuoECandidate NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit, chain E. (162 aa)
nuoDCandidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
Rta_35500Fumarate reductase flavoprotein subunit precursor (Iron(III)-induced flavocytochrome C3)-like protein. (441 aa)
nuoCCandidate NADH:ubiquinone oxidoreductase subunit 5 or 30 kDa subunit, chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (212 aa)
Rta_27490Potassium ion channel-like protein. (247 aa)
atpE-2ATP synthase C chain-like protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (80 aa)
folK6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. (164 aa)
Rta_28080Succinate dehydrogenase cytochrome b-556 subunit-like protein. (148 aa)
sdhACandidate succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (602 aa)
sdhB-2Candidate succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (234 aa)
argHCandidate argininosuccinate lyase (Arginosuccinase). (471 aa)
Rta_29820Flagellar biosynthesis/type III secretory pathway ATPase-like protein. (439 aa)
Rta_30000Candidate ABC type sugar transport system, permease component. (267 aa)
Rta_36290Hypothetical protein. (302 aa)
Rta_30060Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (154 aa)
Rta_30070Hypothetical protein. (262 aa)
ugpECandidate ABC type sugar transport system, permease component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (284 aa)
Rta_31570Outer membrane protein A precursor-like protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (205 aa)
Rta_31660Transcriptional regulator, CRP family-like protein. (224 aa)
Rta_31770Conserved hypothetical protein. (185 aa)
lolDCandidate ABC transporter, ATP-binding component; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (226 aa)
Rta_32050Candidate ABC transporter, permease component. (418 aa)
Rta_32370Candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains. (511 aa)
Rta_33320Ferredoxin-like protein. (100 aa)
Rta_33540Candidate ABC type phosphate/phosphonate transport systems, permease component. (277 aa)
Rta_33550Candidate ABC type phosphate/phosphonate transport systems, permease component. (259 aa)
ctaD-2Candidate cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1); Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (568 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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