STRINGSTRING
Rta_05270 Rta_05270 eda eda aroG aroG aroD aroD hisF hisF hisA hisA guaC guaC Rta_14260 Rta_14260 dusA dusA Rta_18140 Rta_18140 pyrD pyrD rlmN rlmN Rta_19100 Rta_19100 guaB guaB Rta_21560 Rta_21560 Rta_21710 Rta_21710 thiG thiG thiE thiE leuA1 leuA1 leuA leuA moaA moaA Rta_23760 Rta_23760 Rta_24240 Rta_24240 Rta_25160 Rta_25160 dapA-2 dapA-2 kdsA kdsA tpiA tpiA Rta_27130 Rta_27130 trpF trpF trpA trpA pdxJ pdxJ lldD lldD Rta_29390 Rta_29390 nadC nadC dusB dusB tal tal trpC trpC rpe rpe fba fba Rta_06670 Rta_06670 dapA dapA gltB gltB Rta_00390 Rta_00390 Rta_00620 Rta_00620 pyrF pyrF hemB hemB lipA lipA Rta_11470 Rta_11470
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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experimentally determined
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Rta_05270Conserved hypothetical protein; Belongs to the radical SAM superfamily. RlmN family. (343 aa)
eda2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase; Candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2- dehydro-3-deoxyphosphogluconate aldolase (Phospho-2- dehydro-3-deoxygluconate aldolase). (214 aa)
aroGCandidate phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase); Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). (373 aa)
aroDCandidate 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. (240 aa)
hisFCandidate Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (259 aa)
hisACandidate 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. (225 aa)
guaCGuanosine monophosphate reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 2 subfamily. (325 aa)
Rta_14260hydroxymethylglutaryl-CoA lyase (3-hydroxy-3-methylglutarate-CoA lyase)-like protein. (312 aa)
dusACandidate tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (331 aa)
Rta_18140Oxidoreductases-like protein. (777 aa)
pyrDCandidate dihydroorotate dehydrogenase (Dihydroorotate oxidase); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (354 aa)
rlmNConserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (385 aa)
Rta_19100Candidate 5-dehydro-4-deoxyglucarate dehydratase (5-keto-4-deoxy- glucarate dehydratase); Belongs to the DapA family. (312 aa)
guaBCandidate Inosine-5 -monophosphate dehydrogenase (IMP dehydrogenase); Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (490 aa)
Rta_21560Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. (310 aa)
Rta_21710hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein; (HL) (3- hydroxy-3-methylglutarate-CoA lyase). (305 aa)
thiGCandidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (259 aa)
thiEThiamine-phosphate synthase. (347 aa)
leuA1Alpha-IPM synthetase 1; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (512 aa)
leuAAlpha-IPM synthetase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (565 aa)
moaACandidate molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (371 aa)
Rta_23760Conserved hypothetical protein. (395 aa)
Rta_24240Candidate hydroxyacid oxidase (Glycolate oxidase). (376 aa)
Rta_251602-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein. (319 aa)
dapA-2Candidate dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (281 aa)
kdsACandidate 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. (285 aa)
tpiATriose-phosphate isomerase (Triosephosphate isomerase)-like protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (255 aa)
Rta_27130L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases-like protein. (417 aa)
trpFCandidate N-(5 -phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family. (248 aa)
trpACandidate tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (269 aa)
pdxJCandidate pyridoxal phosphate biosynthetic protein; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. (251 aa)
lldDCandidate L-lactate dehydrogenase (Cytochrome). (389 aa)
Rta_29390Candidate bifunctional protein : L-lactate dehydrogenase;Citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family. (688 aa)
nadCCandidate nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]); Belongs to the NadC/ModD family. (287 aa)
dusBCandidate tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (378 aa)
talCandidate transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (340 aa)
trpCCandidate indole-3-glycerol phosphate synthase; Belongs to the TrpC family. (263 aa)
rpeCandidate ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3- epimerase). (227 aa)
fbaCandidate fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
Rta_06670Candidate Hydroxymethylglutaryl-CoA lyase. (306 aa)
dapACandidate dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (303 aa)
gltBCandidate Ferredoxin-dependent glutamate synthase. (1573 aa)
Rta_00390Conserved hypothetical protein. (421 aa)
Rta_00620Candidate flavoprotein NADH-dependent oxidoreductase. (369 aa)
pyrFCandidate Orotidine 5 -phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. (291 aa)
hemBCandidate Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (336 aa)
lipACandidate lipoic acid synthetase (Lipoate synthase); Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (327 aa)
Rta_114702- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase. (213 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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