STRINGSTRING
queC queC Rta_01230 Rta_01230 trmU trmU leuS leuS argS argS Rta_06300 Rta_06300 tyrS tyrS ttcA ttcA trpS trpS argG argG gltX gltX Rta_11050 Rta_11050 Rta_15040 Rta_15040 cysS cysS tilS tilS Rta_15950 Rta_15950 Rta_16490 Rta_16490 Rta_18260 Rta_18260 guaA guaA nadD nadD cysH cysH cysD cysD nadE nadE Rta_25180 Rta_25180 Rta_25190 Rta_25190 Rta_25890 Rta_25890 glnS glnS metG metG valS valS ribF ribF ileS ileS coaD coaD phrB phrB Rta_34230 Rta_34230 Rta_37130 Rta_37130 Rta_37150 Rta_37150
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
queCConserved hypothetical protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. (205 aa)
Rta_01230Conserved hypothetical protein. (140 aa)
trmUCandidate tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (374 aa)
leuSCandidate Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (891 aa)
argSCandidate Arginyl-tRNA synthetase. (557 aa)
Rta_06300Bifunctional protein : transcriptional regulator, AraC family; universal stress protein-like protein. (656 aa)
tyrSCandidate Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (372 aa)
ttcAConserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (309 aa)
trpSCandidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase); Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (431 aa)
argGCandidate argininosuccinate synthase (Citrulline--aspartate ligase); Belongs to the argininosuccinate synthase family. Type 2 subfamily. (448 aa)
gltXCandidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase); Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (460 aa)
Rta_11050Conserved hypothetical protein. (254 aa)
Rta_15040glutamyl-tRNA synthetase (Glutamate--tRNA ligase)-like protein. (275 aa)
cysSCandidate cysteinyl-tRNA synthetase (Cysteine--tRNA ligase); Belongs to the class-I aminoacyl-tRNA synthetase family. (458 aa)
tilSCandidate tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (328 aa)
Rta_15950(NAD(+) diphosphorylase) (NMN adenylyltransferase); ADP compounds hydrolase. (334 aa)
Rta_16490Conserved hypothetical protein. (145 aa)
Rta_18260Conserved hypothetical protein. (269 aa)
guaACandidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. (537 aa)
nadDCandidate nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+) pyrophosphorylase); Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (203 aa)
cysH3 - phosphoadenylylsulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (246 aa)
cysDATP-sulfurylase small subunit. (310 aa)
nadECandidate NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (538 aa)
Rta_25180Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit). (310 aa)
Rta_25190Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit). (249 aa)
Rta_25890Conserved hypothetical protein. (155 aa)
glnSCandidate glutaminyl-tRNA synthetase (Glutamine--tRNA ligase). (596 aa)
metGCandidate methionyl-tRNA synthetase (Methionine--tRNA ligase); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (690 aa)
valSCandidate valyl-tRNA synthetase (Valine--tRNA ligase); Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (964 aa)
ribFCandidate bifunctional riboflavin biosynthesis protein : Riboflavin kinase (Flavokinase); FMN adenylyltransferase (FAD pyrophosphorylase); Belongs to the ribF family. (332 aa)
ileSCandidate isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase); Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 sub [...] (956 aa)
coaDDephospho-CoA pyrophosphorylase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (167 aa)
phrBCandidate deoxyribodipyrimidine photolyase (photoreactivating enzyme); Belongs to the DNA photolyase family. (497 aa)
Rta_34230Candidate asparagine synthetase (glutamine-hydrolyzing). (595 aa)
Rta_37130Candidate Aut protein (necessary for autotrophic growth); Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (169 aa)
Rta_37150Deoxyribodipyrimidine photolyase-like protein. (523 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.