STRINGSTRING
adhC adhC Rta_01070 Rta_01070 ppcK ppcK Rta_02500 Rta_02500 aceE aceE gpmB gpmB Rta_07340 Rta_07340 Rta_08280 Rta_08280 fbp fbp Rta_10430 Rta_10430 lpd lpd Rta_14110 Rta_14110 acsA acsA Rta_17720 Rta_17720 aceE-2 aceE-2 aceF aceF Rta_18700 Rta_18700 Rta_18810 Rta_18810 Rta_23090 Rta_23090 ppsA ppsA eno eno tpiA tpiA gpmA gpmA pgi pgi fba fba pykA pykA pgk pgk gapA gapA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
adhCGlutathione-dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (368 aa)
Rta_01070Hypothetical protein. (191 aa)
ppcKCandidate Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (617 aa)
Rta_02500Candidate NADP-dependent alcohol dehydrogenase. (351 aa)
aceECandidate pyruvate dehydrogenase; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (877 aa)
gpmBCandidate phosphoglycerate mutase (Phosphoglyceromutase). (213 aa)
Rta_07340N-acetylmannosamine kinase(ManNAc kinase)-like protein. (315 aa)
Rta_08280Conserved hypothetical protein; Belongs to the glucose-6-phosphate 1-epimerase family. (276 aa)
fbpD-fructose-1,6-bisphosphate 1-phosphohydrolase. (338 aa)
Rta_10430Acetyl-CoA synthase (Acetate thiokinase). (603 aa)
lpdDihydrolipoamide dehydrogenase. (464 aa)
Rta_14110pimeloyl-CoA synthetase-like protein. (695 aa)
acsACandidate acetyl-coenzyme A synthetase(Acetate--CoA ligase); Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (661 aa)
Rta_17720Conserved hypothetical protein. (309 aa)
aceE-2Candidate pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (901 aa)
aceFDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (567 aa)
Rta_18700Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase). (598 aa)
Rta_18810Dihydrolipoamide dehydrogenase. (476 aa)
Rta_23090Aldehyde dehydrogenase (NAD+)-like protein; Belongs to the aldehyde dehydrogenase family. (477 aa)
ppsACandidate phosphoenolpyruvate synthase (Pyruvate,water dikinase); Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (797 aa)
eno2-phospho-D- glycerate hydro-lyase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
tpiATriose-phosphate isomerase (Triosephosphate isomerase)-like protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (255 aa)
gpmACandidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (247 aa)
pgiPhosphohexose isomerase; Belongs to the GPI family. (536 aa)
fbaCandidate fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
pykACandidate pyruvate kinase II; Belongs to the pyruvate kinase family. (477 aa)
pgkCandidate phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (397 aa)
gapACandidate glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (333 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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