Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rta_05390 | Rta_16800 | Rta_05390 | Rta_16800 | Aminotransferase-like protein. | Aminotransferases-like protein. | 0.910 |
| Rta_16800 | Rta_05390 | Rta_16800 | Rta_05390 | Aminotransferases-like protein. | Aminotransferase-like protein. | 0.910 |
| Rta_16800 | dapB | Rta_16800 | Rta_02280 | Aminotransferases-like protein. | Candidate Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.427 |
| Rta_20980 | Rta_32670 | Rta_20980 | Rta_32670 | Aminotransferases-like protein. | N-acetylornithinase. | 0.904 |
| Rta_20980 | argD | Rta_20980 | Rta_27880 | Aminotransferases-like protein. | Candidate acetylornithine aminotransferase (acetylornithine transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.915 |
| Rta_20980 | dapD | Rta_20980 | Rta_20990 | Aminotransferases-like protein. | Tetrahydropicolinate succinylase; Belongs to the transferase hexapeptide repeat family. | 0.984 |
| Rta_20980 | dapE | Rta_20980 | Rta_21010 | Aminotransferases-like protein. | Candidate succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.973 |
| Rta_20980 | lysA | Rta_20980 | Rta_07930 | Aminotransferases-like protein. | Candidate Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.402 |
| Rta_20980 | lysC | Rta_20980 | Rta_15450 | Aminotransferases-like protein. | Candidate aspartokinase (Aspartate kinase); Belongs to the aspartokinase family. | 0.408 |
| Rta_20980 | thrA | Rta_20980 | Rta_24040 | Aminotransferases-like protein. | Candidate homoserine dehydrogenase. | 0.579 |
| Rta_21560 | asd | Rta_21560 | Rta_28180 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.939 |
| Rta_21560 | dapA | Rta_21560 | Rta_07370 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.923 |
| Rta_21560 | dapA-2 | Rta_21560 | Rta_25700 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.924 |
| Rta_21560 | dapB | Rta_21560 | Rta_02280 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.962 |
| Rta_21560 | lysC | Rta_21560 | Rta_15450 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate aspartokinase (Aspartate kinase); Belongs to the aspartokinase family. | 0.427 |
| Rta_21560 | thrA | Rta_21560 | Rta_24040 | Dihydrodipicolinate synthase-like protein; Belongs to the DapA family. | Candidate homoserine dehydrogenase. | 0.914 |
| Rta_32670 | Rta_20980 | Rta_32670 | Rta_20980 | N-acetylornithinase. | Aminotransferases-like protein. | 0.904 |
| Rta_32670 | argD | Rta_32670 | Rta_27880 | N-acetylornithinase. | Candidate acetylornithine aminotransferase (acetylornithine transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.919 |
| Rta_32670 | dapE | Rta_32670 | Rta_21010 | N-acetylornithinase. | Candidate succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.924 |
| Rta_32670 | dapF | Rta_32670 | Rta_09500 | N-acetylornithinase. | Candidate Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.911 |
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