STRINGSTRING
Rta_01150 Rta_01150 Rta_01930 Rta_01930 Rta_03630 Rta_03630 Rta_04170 Rta_04170 gcdH gcdH Rta_05680 Rta_05680 Rta_09140 Rta_09140 fadA fadA Rta_11240 Rta_11240 Rta_11780 Rta_11780 Rta_12030 Rta_12030 Rta_12870 Rta_12870 Rta_13950 Rta_13950 Rta_14780 Rta_14780 Rta_17950 Rta_17950 Rta_18100 Rta_18100 gcdH-2 gcdH-2 Rta_20040 Rta_20040 Rta_20050 Rta_20050 pobA pobA Rta_22040 Rta_22040 Rta_22300 Rta_22300 Rta_22310 Rta_22310 Rta_22340 Rta_22340 Rta_24750 Rta_24750 Rta_24760 Rta_24760 Rta_24770 Rta_24770 Rta_24780 Rta_24780 Rta_24790 Rta_24790 Rta_24800 Rta_24800 Rta_29370 Rta_29370 Rta_32470 Rta_32470 Rta_33880 Rta_33880 pcaJ pcaJ pcaI pcaI Rta_34370 Rta_34370 Rta_36460 Rta_36460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rta_01150Beta-ketoadipate enol-lactone hydrolase (3-oxoadipate enol-lactonase)-like protein. (261 aa)
Rta_01930Conserved hypothetical protein. (204 aa)
Rta_03630Conserved hypothetical protein. (256 aa)
Rta_04170Conserved hypothetical protein. (162 aa)
gcdHCandidate glutaryl-CoA dehydrogenase. (396 aa)
Rta_05680Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Rta_09140Unsaturated acyl-CoA hydratase. (828 aa)
fadA3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
Rta_11240Conserved hypothetical protein. (215 aa)
Rta_117802-keto-4-pentenoate hydratase-like protein. (250 aa)
Rta_12030Protocatechuate 3,4-dioxygenase, beta subunit-like protein. (186 aa)
Rta_12870Tautomerase-like protein; Belongs to the 4-oxalocrotonate tautomerase family. (62 aa)
Rta_13950Conserved hypothetical protein. (226 aa)
Rta_147804-carboxymuconolactone decarboxylase-like protein. (127 aa)
Rta_17950Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein. (390 aa)
Rta_18100Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
gcdH-2Candidate glutaryl-CoA dehydrogenase. (392 aa)
Rta_200403-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Rta_200503-hydroxybutyryl-CoA epimerase-like protein. (700 aa)
pobACandidate P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3- monooxygenase). (392 aa)
Rta_220403-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein. (491 aa)
Rta_22300Candidate benzoyl-CoA oxygenase component B. (474 aa)
Rta_22310Unsaturated acyl-CoA hydratase. (563 aa)
Rta_22340Candidate benzoate-CoA ligase. (524 aa)
Rta_24750Candidate 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (315 aa)
Rta_24760Candidate protocatechuate 4,5-dioxygenase beta chain. (285 aa)
Rta_24770Candidate protocatechuate 4,5-dioxygenase alpha chain. (124 aa)
Rta_24780Candidate 2-pyrone-4,6-dicarboxylate lactonase. (307 aa)
Rta_24790Candidate 4-Hydroxy-4-methyl-2-oxoglutarate aldolase. (227 aa)
Rta_24800Candidate 4-oxalomesaconate hydratase. (342 aa)
Rta_29370Demethylmenaquinone methyltransferase-like protein. (228 aa)
Rta_32470Candidate 4-hydroxybenzoyl-CoA thioesterase. (137 aa)
Rta_33880Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
pcaJCandidate 3-oxoadipate CoA-transferase subunit B (Beta- ketoadipate:succinyl-CoA transferase subunit B). (214 aa)
pcaICandidate 3-oxoadipate CoA-transferase subunit A (Beta- ketoadipate:succinyl-CoA transferase subunit A). (234 aa)
Rta_34370Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
Rta_36460Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (264 aa)
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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