Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIQ50042.1 | SIQ97167.1 | SAMN05421840_101428 | SAMN05421840_106212 | Flagellum-specific ATP synthase. | Flagellum-specific ATP synthase. | 0.920 |
| SIQ97167.1 | SIQ50042.1 | SAMN05421840_106212 | SAMN05421840_101428 | Flagellum-specific ATP synthase. | Flagellum-specific ATP synthase. | 0.920 |
| SIR03409.1 | SIR32089.1 | SAMN05421840_107166 | SAMN05421840_11582 | ATP-dependent DNA helicase UvrD. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.707 |
| SIR03409.1 | mutL | SAMN05421840_107166 | SAMN05421840_104280 | ATP-dependent DNA helicase UvrD. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.892 |
| SIR03409.1 | recB | SAMN05421840_107166 | SAMN05421840_11293 | ATP-dependent DNA helicase UvrD. | DNA helicase/exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombi [...] | 0.505 |
| SIR03409.1 | recG | SAMN05421840_107166 | SAMN05421840_10360 | ATP-dependent DNA helicase UvrD. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.485 |
| SIR03409.1 | ruvB | SAMN05421840_107166 | SAMN05421840_11184 | ATP-dependent DNA helicase UvrD. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.466 |
| SIR03409.1 | uvrA | SAMN05421840_107166 | SAMN05421840_10738 | ATP-dependent DNA helicase UvrD. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.826 |
| SIR03409.1 | uvrB | SAMN05421840_107166 | SAMN05421840_11229 | ATP-dependent DNA helicase UvrD. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.955 |
| SIR03409.1 | ychF | SAMN05421840_107166 | SAMN05421840_101128 | ATP-dependent DNA helicase UvrD. | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.450 |
| SIR08952.1 | clpX | SAMN05421840_108155 | SAMN05421840_10593 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.475 |
| SIR08952.1 | hscA | SAMN05421840_108155 | SAMN05421840_11128 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.970 |
| SIR08952.1 | hslU | SAMN05421840_108155 | SAMN05421840_107138 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.731 |
| SIR08952.1 | htpG | SAMN05421840_108155 | SAMN05421840_10871 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.867 |
| SIR08952.1 | lon | SAMN05421840_108155 | SAMN05421840_10594 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | ATP-dependent proteinase. Serine peptidase. MEROPS family S16; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.822 |
| SIR08952.1 | ruvB | SAMN05421840_108155 | SAMN05421840_11184 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.653 |
| SIR15325.1 | SIR15399.1 | SAMN05421840_1105 | SAMN05421840_1109 | Superfamily I DNA and RNA helicases. | Predicted ATPase. | 0.491 |
| SIR15399.1 | SIR15325.1 | SAMN05421840_1109 | SAMN05421840_1105 | Predicted ATPase. | Superfamily I DNA and RNA helicases. | 0.491 |
| SIR28445.1 | hscA | SAMN05421840_11432 | SAMN05421840_11128 | Hypothetical protein. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.645 |
| SIR28445.1 | htpG | SAMN05421840_11432 | SAMN05421840_10871 | Hypothetical protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.877 |
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