11 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_7G023930	Uncharacterized protein. (282 aa)
	Csa_7G023980	Uncharacterized protein. (293 aa)
	Csa_6G188110	Uncharacterized protein. (904 aa)
	Csa_6G366340	Uncharacterized protein. (1045 aa)
	Csa_4G050150	Uncharacterized protein. (692 aa)
	Csa_5G610450	PB1 domain-containing protein. (708 aa)
	Csa_4G293270	Uncharacterized protein. (961 aa)
	Csa_3G122380	Uncharacterized protein. (930 aa)
	Csa_3G622430	Uncharacterized protein. (963 aa)
	Csa_2G122530	Uncharacterized protein. (657 aa)
	Csa_1G014320	Uncharacterized protein. (1048 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G014320	Csa_2G122530	A0A0A0LPB5	A0A0A0LHN8	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_1G014320	Csa_3G122380	A0A0A0LPB5	A0A0A0L696	Uncharacterized protein.	Uncharacterized protein.	0.449
Csa_1G014320	Csa_3G622430	A0A0A0LPB5	A0A0A0LBJ2	Uncharacterized protein.	Uncharacterized protein.	0.597
Csa_1G014320	Csa_4G050150	A0A0A0LPB5	A0A0A0KUX1	Uncharacterized protein.	Uncharacterized protein.	0.427
Csa_1G014320	Csa_4G293270	A0A0A0LPB5	A0A0A0L0T6	Uncharacterized protein.	Uncharacterized protein.	0.442
Csa_1G014320	Csa_5G610450	A0A0A0LPB5	A0A0A0KWH3	Uncharacterized protein.	PB1 domain-containing protein.	0.431
Csa_1G014320	Csa_6G188110	A0A0A0LPB5	A0A0A0KC74	Uncharacterized protein.	Uncharacterized protein.	0.457
Csa_1G014320	Csa_6G366340	A0A0A0LPB5	A0A0A0KIP5	Uncharacterized protein.	Uncharacterized protein.	0.454
Csa_1G014320	Csa_7G023930	A0A0A0LPB5	A0A0A0K2S2	Uncharacterized protein.	Uncharacterized protein.	0.418
Csa_1G014320	Csa_7G023980	A0A0A0LPB5	A0A0A0K2T0	Uncharacterized protein.	Uncharacterized protein.	0.476
Csa_2G122530	Csa_1G014320	A0A0A0LHN8	A0A0A0LPB5	Uncharacterized protein.	Uncharacterized protein.	0.435
Csa_2G122530	Csa_3G122380	A0A0A0LHN8	A0A0A0L696	Uncharacterized protein.	Uncharacterized protein.	0.475
Csa_2G122530	Csa_3G622430	A0A0A0LHN8	A0A0A0LBJ2	Uncharacterized protein.	Uncharacterized protein.	0.439
Csa_2G122530	Csa_4G050150	A0A0A0LHN8	A0A0A0KUX1	Uncharacterized protein.	Uncharacterized protein.	0.495
Csa_2G122530	Csa_4G293270	A0A0A0LHN8	A0A0A0L0T6	Uncharacterized protein.	Uncharacterized protein.	0.500
Csa_2G122530	Csa_5G610450	A0A0A0LHN8	A0A0A0KWH3	Uncharacterized protein.	PB1 domain-containing protein.	0.526
Csa_2G122530	Csa_6G188110	A0A0A0LHN8	A0A0A0KC74	Uncharacterized protein.	Uncharacterized protein.	0.527
Csa_2G122530	Csa_6G366340	A0A0A0LHN8	A0A0A0KIP5	Uncharacterized protein.	Uncharacterized protein.	0.524
Csa_2G122530	Csa_7G023930	A0A0A0LHN8	A0A0A0K2S2	Uncharacterized protein.	Uncharacterized protein.	0.514
Csa_2G122530	Csa_7G023980	A0A0A0LHN8	A0A0A0K2T0	Uncharacterized protein.	Uncharacterized protein.	0.520