20 items (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Csa_7G023940	Uncharacterized protein. (284 aa)
	Csa_7G021910	Uncharacterized protein. (296 aa)
	Csa_6G109640	GRAS domain-containing protein; Belongs to the GRAS family. (754 aa)
	Csa_6G290270	Uncharacterized protein. (598 aa)
	Csa_6G062315	Uncharacterized protein. (200 aa)
	Csa_7G451960	PWWP domain-containing protein. (819 aa)
	Csa_6G362970	Uncharacterized protein. (396 aa)
	Csa_6G154530	Uncharacterized protein. (658 aa)
	Csa_6G507470	Uncharacterized protein. (307 aa)
	Csa_5G151560	Uncharacterized protein. (682 aa)
	Csa_5G503610	Uncharacterized protein. (927 aa)
	Csa_5G177670	Uncharacterized protein. (348 aa)
	Csa_4G114200	Uncharacterized protein. (643 aa)
	Csa_3G735000	Uncharacterized protein. (888 aa)
	Csa_3G229380	Uncharacterized protein. (335 aa)
	Csa_3G816710	VQ domain-containing protein. (240 aa)
	Csa_3G891660	NAB domain-containing protein. (964 aa)
	Csa_2G350460	Uncharacterized protein. (1159 aa)
	Csa_1G038890	Uncharacterized protein. (327 aa)
	Csa_1G470450	Uncharacterized protein. (676 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G038890	Csa_1G470450	A0A0A0LTF3	A0A0A0LX77	Uncharacterized protein.	Uncharacterized protein.	0.442
Csa_1G038890	Csa_2G350460	A0A0A0LTF3	A0A0A0LKP5	Uncharacterized protein.	Uncharacterized protein.	0.461
Csa_1G038890	Csa_3G891660	A0A0A0LTF3	A0A0A0LJP5	Uncharacterized protein.	NAB domain-containing protein.	0.484
Csa_1G038890	Csa_4G114200	A0A0A0LTF3	A0A0A0KY08	Uncharacterized protein.	Uncharacterized protein.	0.416
Csa_1G038890	Csa_6G109640	A0A0A0LTF3	A0A0A0KAR4	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.497
Csa_1G038890	Csa_6G154530	A0A0A0LTF3	A0A0A0KF00	Uncharacterized protein.	Uncharacterized protein.	0.505
Csa_1G038890	Csa_6G290270	A0A0A0LTF3	A0A0A0KC46	Uncharacterized protein.	Uncharacterized protein.	0.448
Csa_1G038890	Csa_6G507470	A0A0A0LTF3	A0A0A0KJJ8	Uncharacterized protein.	Uncharacterized protein.	0.448
Csa_1G038890	Csa_7G021910	A0A0A0LTF3	A0A0A0K655	Uncharacterized protein.	Uncharacterized protein.	0.400
Csa_1G038890	Csa_7G023940	A0A0A0LTF3	A0A0A0K0T5	Uncharacterized protein.	Uncharacterized protein.	0.425
Csa_1G470450	Csa_1G038890	A0A0A0LX77	A0A0A0LTF3	Uncharacterized protein.	Uncharacterized protein.	0.442
Csa_1G470450	Csa_2G350460	A0A0A0LX77	A0A0A0LKP5	Uncharacterized protein.	Uncharacterized protein.	0.491
Csa_1G470450	Csa_3G735000	A0A0A0LX77	A0A0A0LA85	Uncharacterized protein.	Uncharacterized protein.	0.490
Csa_1G470450	Csa_3G816710	A0A0A0LX77	A0A0A0LER4	Uncharacterized protein.	VQ domain-containing protein.	0.474
Csa_1G470450	Csa_4G114200	A0A0A0LX77	A0A0A0KY08	Uncharacterized protein.	Uncharacterized protein.	0.491
Csa_1G470450	Csa_5G151560	A0A0A0LX77	A0A0A0KK47	Uncharacterized protein.	Uncharacterized protein.	0.450
Csa_1G470450	Csa_5G177670	A0A0A0LX77	A0A0A0KNS4	Uncharacterized protein.	Uncharacterized protein.	0.408
Csa_1G470450	Csa_6G062315	A0A0A0LX77	A0A0A0KCP9	Uncharacterized protein.	Uncharacterized protein.	0.496
Csa_1G470450	Csa_6G507470	A0A0A0LX77	A0A0A0KJJ8	Uncharacterized protein.	Uncharacterized protein.	0.450
Csa_1G470450	Csa_7G021910	A0A0A0LX77	A0A0A0K655	Uncharacterized protein.	Uncharacterized protein.	0.482