(11 nodes) U6 snRNP, and U4/U6 x U5 tri-snRNP complex network (Cucumis sativus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
	Csa_7G428250	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	Csa_6G404170	WD_REPEATS_REGION domain-containing protein. (569 aa)
	Csa_5G177130	Uncharacterized protein. (923 aa)
	Csa_5G602130	Nop domain-containing protein. (484 aa)
	Csa_5G266840	Sm domain-containing protein. (92 aa)
	Csa_5G650610	Uncharacterized protein. (939 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	Csa_3G697950	Sm domain-containing protein. (99 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_3G697950	Csa_5G177130	A0A0A0LD28	A0A0A0KLQ4	Sm domain-containing protein.	Uncharacterized protein.	0.984
Csa_3G697950	Csa_5G266840	A0A0A0LD28	A0A0A0KSS9	Sm domain-containing protein.	Sm domain-containing protein.	0.999
Csa_3G697950	Csa_5G602130	A0A0A0LD28	A0A0A0KSD2	Sm domain-containing protein.	Nop domain-containing protein.	0.983
Csa_3G697950	Csa_5G650610	A0A0A0LD28	A0A0A0KXY6	Sm domain-containing protein.	Uncharacterized protein.	0.989
Csa_3G697950	Csa_6G404170	A0A0A0LD28	A0A0A0KHD8	Sm domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.963
Csa_3G697950	Csa_7G428250	A0A0A0LD28	A0A0A0K9T1	Sm domain-containing protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.999
Csa_3G697950	LSM3	A0A0A0LD28	A0A0A0K8S0	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
Csa_3G697950	LSM4	A0A0A0LD28	A0A0A0K9I4	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
Csa_3G697950	LSM5	A0A0A0LD28	A0A0A0L923	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
Csa_3G697950	LSM8	A0A0A0LD28	A0A0A0LT86	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
Csa_5G177130	Csa_3G697950	A0A0A0KLQ4	A0A0A0LD28	Uncharacterized protein.	Sm domain-containing protein.	0.984
Csa_5G177130	Csa_5G266840	A0A0A0KLQ4	A0A0A0KSS9	Uncharacterized protein.	Sm domain-containing protein.	0.983
Csa_5G177130	Csa_5G602130	A0A0A0KLQ4	A0A0A0KSD2	Uncharacterized protein.	Nop domain-containing protein.	0.995
Csa_5G177130	Csa_5G650610	A0A0A0KLQ4	A0A0A0KXY6	Uncharacterized protein.	Uncharacterized protein.	0.992
Csa_5G177130	Csa_6G404170	A0A0A0KLQ4	A0A0A0KHD8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
Csa_5G177130	Csa_7G428250	A0A0A0KLQ4	A0A0A0K9T1	Uncharacterized protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.988
Csa_5G177130	LSM3	A0A0A0KLQ4	A0A0A0K8S0	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.986
Csa_5G177130	LSM4	A0A0A0KLQ4	A0A0A0K9I4	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.962
Csa_5G177130	LSM5	A0A0A0KLQ4	A0A0A0L923	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.981
Csa_5G177130	LSM8	A0A0A0KLQ4	A0A0A0LT86	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.992